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ARMC7 (armadillo repeat containing 7)

Identity

Alias_symbol (synonym)FLJ22160
Other alias-
HGNC (Hugo) ARMC7
LocusID (NCBI) 79637
Atlas_Id 60514
Location 17q25.1  [Link to chromosome band 17q25]
Location_base_pair Starts at 75109952 and ends at 75130265 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARMC7 (17q25.1) / HN1 (17q25.1)RBAK-RBAKDN (7p22.1) / ARMC7 (17q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC7   26168
Cards
Entrez_Gene (NCBI)ARMC7  79637  armadillo repeat containing 7
Aliases
GeneCards (Weizmann)ARMC7
Ensembl hg19 (Hinxton)ENSG00000125449 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125449 [Gene_View]  chr17:75109952-75130265 [Contig_View]  ARMC7 [Vega]
ICGC DataPortalENSG00000125449
TCGA cBioPortalARMC7
AceView (NCBI)ARMC7
Genatlas (Paris)ARMC7
WikiGenes79637
SOURCE (Princeton)ARMC7
Genetics Home Reference (NIH)ARMC7
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC7  -     chr17:75109952-75130265 +  17q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC7  -     17q25.1   [Description]    (hg19-Feb_2009)
EnsemblARMC7 - 17q25.1 [CytoView hg19]  ARMC7 - 17q25.1 [CytoView hg38]
Mapping of homologs : NCBIARMC7 [Mapview hg19]  ARMC7 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK025813 AK300997 AK309353 AK310697 AW081695
RefSeq transcript (Entrez)NM_001304271 NM_001304272 NM_001304273 NM_024585
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMC7
Cluster EST : UnigeneHs.413047 [ NCBI ]
CGAP (NCI)Hs.413047
Alternative Splicing GalleryENSG00000125449
Gene ExpressionARMC7 [ NCBI-GEO ]   ARMC7 [ EBI - ARRAY_EXPRESS ]   ARMC7 [ SEEK ]   ARMC7 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC7 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79637
GTEX Portal (Tissue expression)ARMC7
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H6L4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H6L4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H6L4
Splice isoforms : SwissVarQ9H6L4
PhosPhoSitePlusQ9H6L4
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ARMC7
DMDM Disease mutations79637
Blocks (Seattle)ARMC7
SuperfamilyQ9H6L4
Human Protein AtlasENSG00000125449
Peptide AtlasQ9H6L4
HPRD08649
IPIIPI00002336   
Protein Interaction databases
DIP (DOE-UCLA)Q9H6L4
IntAct (EBI)Q9H6L4
FunCoupENSG00000125449
BioGRIDARMC7
STRING (EMBL)ARMC7
ZODIACARMC7
Ontologies - Pathways
QuickGOQ9H6L4
Ontology : AmiGOprotein binding  nucleus  cytoplasm  catenin complex  protein phosphatase binding  alpha-catenin binding  cadherin binding  
Ontology : EGO-EBIprotein binding  nucleus  cytoplasm  catenin complex  protein phosphatase binding  alpha-catenin binding  cadherin binding  
NDEx NetworkARMC7
Atlas of Cancer Signalling NetworkARMC7
Wikipedia pathwaysARMC7
Orthology - Evolution
OrthoDB79637
GeneTree (enSembl)ENSG00000125449
Phylogenetic Trees/Animal Genes : TreeFamARMC7
HOVERGENQ9H6L4
HOGENOMQ9H6L4
Homologs : HomoloGeneARMC7
Homology/Alignments : Family Browser (UCSC)ARMC7
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC7 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC7
dbVarARMC7
ClinVarARMC7
1000_GenomesARMC7 
Exome Variant ServerARMC7
ExAC (Exome Aggregation Consortium)ARMC7 (select the gene name)
Genetic variants : HAPMAP79637
Genomic Variants (DGV)ARMC7 [DGVbeta]
DECIPHERARMC7 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC7 
Mutations
ICGC Data PortalARMC7 
TCGA Data PortalARMC7 
Broad Tumor PortalARMC7
OASIS PortalARMC7 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC7  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC7
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC7
DgiDB (Drug Gene Interaction Database)ARMC7
DoCM (Curated mutations)ARMC7 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC7 (select a term)
intoGenARMC7
Cancer3DARMC7(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMC7
Genetic Testing Registry ARMC7
NextProtQ9H6L4 [Medical]
TSGene79637
GENETestsARMC7
Target ValidationARMC7
Huge Navigator ARMC7 [HugePedia]
snp3D : Map Gene to Disease79637
BioCentury BCIQARMC7
ClinGenARMC7
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79637
Chemical/Pharm GKB GenePA134901380
Clinical trialARMC7
Miscellaneous
canSAR (ICR)ARMC7 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC7
EVEXARMC7
GoPubMedARMC7
iHOPARMC7
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:46 CEST 2017

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