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ARMC8 (armadillo repeat containing 8)

Identity

Alias_namesVID28 homolog (S. cerevisiae)
Alias_symbol (synonym)HSPC056
DKFZP434A043
GID5
VID28
Other aliasS863-2
HGNC (Hugo) ARMC8
LocusID (NCBI) 25852
Atlas_Id 40884
Location 3q22.3  [Link to chromosome band 3q22]
Location_base_pair Starts at 137906090 and ends at 138017228 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARMC8 (3q22.3) / ARMC8 (3q22.3)ARMC8 (3q22.3) / CLDN18 (3q22.3)ARMC8 (3q22.3) / IFT57 (3q13.12)
ARMC8 (3q22.3) / PGA3 (11q12.2)ARMC8 (3q22.3) / USP40 (2q37.1)FOXP1 (3p13) / ARMC8 (3q22.3)
USP40 (2q37.1) / ARMC8 (3q22.3)ARMC8 3q22.3 / CLDN18 3q22.3ARMC8 3q22.3 / IFT57 3q13.12
FOXP1 3p13 / ARMC8 3q22.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC8   24999
Cards
Entrez_Gene (NCBI)ARMC8  25852  armadillo repeat containing 8
AliasesGID5; HSPC056; S863-2; VID28
GeneCards (Weizmann)ARMC8
Ensembl hg19 (Hinxton)ENSG00000114098 [Gene_View]  chr3:137906090-138017228 [Contig_View]  ARMC8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000114098 [Gene_View]  chr3:137906090-138017228 [Contig_View]  ARMC8 [Vega]
ICGC DataPortalENSG00000114098
TCGA cBioPortalARMC8
AceView (NCBI)ARMC8
Genatlas (Paris)ARMC8
WikiGenes25852
SOURCE (Princeton)ARMC8
Genetics Home Reference (NIH)ARMC8
Genomic and cartography
GoldenPath hg19 (UCSC)ARMC8  -     chr3:137906090-138017228 +  3q22.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMC8  -     3q22.3   [Description]    (hg38-Dec_2013)
EnsemblARMC8 - 3q22.3 [CytoView hg19]  ARMC8 - 3q22.3 [CytoView hg38]
Mapping of homologs : NCBIARMC8 [Mapview hg19]  ARMC8 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF109184 AF161541 AK001721 AK001882 AK098500
RefSeq transcript (Entrez)NM_001267041 NM_001267042 NM_001282342 NM_014154 NM_015396 NM_213654
RefSeq genomic (Entrez)NC_000003 NC_018914 NT_005612 NW_004929311
Consensus coding sequences : CCDS (NCBI)ARMC8
Cluster EST : UnigeneHs.744868 [ NCBI ]
CGAP (NCI)Hs.744868
Alternative Splicing GalleryENSG00000114098
Gene ExpressionARMC8 [ NCBI-GEO ]   ARMC8 [ EBI - ARRAY_EXPRESS ]   ARMC8 [ SEEK ]   ARMC8 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)25852
GTEX Portal (Tissue expression)ARMC8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8IUR7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8IUR7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8IUR7
Splice isoforms : SwissVarQ8IUR7
PhosPhoSitePlusQ8IUR7
Domaine pattern : Prosite (Expaxy)ARM_REPEAT (PS50176)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    Armadillo   
Domain families : Pfam (Sanger)Arm (PF00514)   
Domain families : Pfam (NCBI)pfam00514   
Domain families : Smart (EMBL)ARM (SM00185)  
Conserved Domain (NCBI)ARMC8
DMDM Disease mutations25852
Blocks (Seattle)ARMC8
SuperfamilyQ8IUR7
Human Protein AtlasENSG00000114098
Peptide AtlasQ8IUR7
HPRD09992
IPIIPI00795553   IPI00794568   IPI00396379   IPI00947550   IPI00947203   IPI00796545   IPI00798137   IPI00946453   IPI00983922   IPI00946909   IPI00947047   IPI00946095   IPI00876987   IPI00945656   IPI00922208   IPI00946765   
Protein Interaction databases
DIP (DOE-UCLA)Q8IUR7
IntAct (EBI)Q8IUR7
FunCoupENSG00000114098
BioGRIDARMC8
STRING (EMBL)ARMC8
ZODIACARMC8
Ontologies - Pathways
QuickGOQ8IUR7
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkARMC8
Atlas of Cancer Signalling NetworkARMC8
Wikipedia pathwaysARMC8
Orthology - Evolution
OrthoDB25852
GeneTree (enSembl)ENSG00000114098
Phylogenetic Trees/Animal Genes : TreeFamARMC8
HOVERGENQ8IUR7
HOGENOMQ8IUR7
Homologs : HomoloGeneARMC8
Homology/Alignments : Family Browser (UCSC)ARMC8
Gene fusions - Rearrangements
Fusion : MitelmanARMC8/CLDN18 [3q22.3/3q22.3]  
Fusion : MitelmanARMC8/IFT57 [3q22.3/3q13.12]  [t(3;3)(q13;q22)]  
Fusion : MitelmanFOXP1/ARMC8 [3p13/3q22.3]  [t(3;3)(p13;q22)]  
Fusion: TCGAARMC8 3q22.3 CLDN18 3q22.3 LGG
Fusion: TCGAARMC8 3q22.3 IFT57 3q13.12 PRAD
Fusion: TCGAFOXP1 3p13 ARMC8 3q22.3 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC8
dbVarARMC8
ClinVarARMC8
1000_GenomesARMC8 
Exome Variant ServerARMC8
ExAC (Exome Aggregation Consortium)ARMC8 (select the gene name)
Genetic variants : HAPMAP25852
Genomic Variants (DGV)ARMC8 [DGVbeta]
DECIPHER (Syndromes)3:137906090-138017228  ENSG00000114098
CONAN: Copy Number AnalysisARMC8 
Mutations
ICGC Data PortalARMC8 
TCGA Data PortalARMC8 
Broad Tumor PortalARMC8
OASIS PortalARMC8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMC8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC8
DgiDB (Drug Gene Interaction Database)ARMC8
DoCM (Curated mutations)ARMC8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC8 (select a term)
intoGenARMC8
Cancer3DARMC8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMC8
Genetic Testing Registry ARMC8
NextProtQ8IUR7 [Medical]
TSGene25852
GENETestsARMC8
Huge Navigator ARMC8 [HugePedia]
snp3D : Map Gene to Disease25852
BioCentury BCIQARMC8
ClinGenARMC8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD25852
Chemical/Pharm GKB GenePA134984953
Clinical trialARMC8
Miscellaneous
canSAR (ICR)ARMC8 (select the gene name)
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC8
EVEXARMC8
GoPubMedARMC8
iHOPARMC8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:35 CET 2017

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