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ARMC9 (armadillo repeat containing 9)

Identity

Other namesARM
KU-MEL-1
NS21
HGNC (Hugo) ARMC9
LocusID (NCBI) 80210
Location 2q37.1
Location_base_pair Starts at 232070913 and ends at 232240590 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARMC9   20730
Cards
Entrez_Gene (NCBI)ARMC9  80210  armadillo repeat containing 9
GeneCards (Weizmann)ARMC9
Ensembl hg19 (Hinxton)ENSG00000135931 [Gene_View]  chr2:232070913-232240590 [Contig_View]  ARMC9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135931 [Gene_View]  chr2:232070913-232240590 [Contig_View]  ARMC9 [Vega]
ICGC DataPortalENSG00000135931
cBioPortalARMC9
AceView (NCBI)ARMC9
Genatlas (Paris)ARMC9
WikiGenes80210
SOURCE (Princeton)ARMC9
Genomic and cartography
GoldenPath hg19 (UCSC)ARMC9  -     chr2:232070913-232240590 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMC9  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblARMC9 - 2q37.1 [CytoView hg19]  ARMC9 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIARMC9 [Mapview hg19]  ARMC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058771 AK022646 AK027163 AK309395 AM393294
RefSeq transcript (Entrez)NM_001271466 NM_001291656 NM_025139
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838867 NW_004929305
Consensus coding sequences : CCDS (NCBI)ARMC9
Cluster EST : UnigeneHs.744341 [ NCBI ]
CGAP (NCI)Hs.744341
Alternative Splicing : Fast-db (Paris)GSHG0017265
Alternative Splicing GalleryENSG00000135931
Gene ExpressionARMC9 [ NCBI-GEO ]     ARMC9 [ SEEK ]   ARMC9 [ MEM ]
SOURCE (Princeton)Expression in : [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3E5 (Uniprot)
NextProtQ7Z3E5  [Medical]
With graphics : InterProQ7Z3E5
Splice isoforms : SwissVarQ7Z3E5 (Swissvar)
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    LisH_dimerisation   
Related proteins : CluSTrQ7Z3E5
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
DMDM Disease mutations80210
Blocks (Seattle)Q7Z3E5
Human Protein AtlasENSG00000135931
Peptide AtlasQ7Z3E5
HPRD07778
IPIIPI00829927   IPI00216484   IPI00003053   IPI00916515   IPI00916087   IPI00916195   IPI00915821   IPI00953532   IPI00916812   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3E5
IntAct (EBI)Q7Z3E5
FunCoupENSG00000135931
BioGRIDARMC9
IntegromeDBARMC9
STRING (EMBL)ARMC9
Ontologies - Pathways
QuickGOQ7Z3E5
Ontology : AmiGOextracellular vesicular exosome  
Ontology : EGO-EBIextracellular vesicular exosome  
Protein Interaction DatabaseARMC9
DoCM (Curated mutations)ARMC9
Wikipedia pathwaysARMC9
Gene fusion - rearrangements
Polymorphisms : SNP, variants
NCBI Variation ViewerARMC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC9
dbVarARMC9
ClinVarARMC9
1000_GenomesARMC9 
Exome Variant ServerARMC9
SNP (GeneSNP Utah)ARMC9
SNP : HGBaseARMC9
Genetic variants : HAPMAPARMC9
Genomic VariantsARMC9  ARMC9 [DGVbeta]
Mutations
ICGC Data PortalENSG00000135931 
Somatic Mutations in Cancer : COSMICARMC9 
CONAN: Copy Number AnalysisARMC9 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:232070913-232240590
Mutations and Diseases : HGMDARMC9
OMIM
MedgenARMC9
NextProtQ7Z3E5 [Medical]
GENETestsARMC9
Disease Genetic AssociationARMC9
Huge Navigator ARMC9 [HugePedia]  ARMC9 [HugeCancerGEM]
snp3D : Map Gene to Disease80210
DGIdb (Drug Gene Interaction db)ARMC9
General knowledge
Homologs : HomoloGeneARMC9
Homology/Alignments : Family Browser (UCSC)ARMC9
Phylogenetic Trees/Animal Genes : TreeFamARMC9
Chemical/Protein Interactions : CTD80210
Chemical/Pharm GKB GenePA142672581
Clinical trialARMC9
Cancer Resource (Charite)ENSG00000135931
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
CoreMineARMC9
GoPubMedARMC9
iHOPARMC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2014Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Sat Dec 20 20:14:08 CET 2014

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