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ARMC9 (armadillo repeat containing 9)

Identity

Alias (NCBI)ARM
JBTS30
KU-MEL-1
NS21
HGNC (Hugo) ARMC9
HGNC Alias symbFLJ12584
KIAA1868
ARM
KU-MEL-1
LocusID (NCBI) 80210
Atlas_Id 43031
Location 2q37.1  [Link to chromosome band 2q37]
Location_base_pair Starts at 231198631 and ends at 231345202 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARMC9 (2q37.1) / ARMC9 (2q37.1)ARMC9 (2q37.1) / EVL (14q32.2)ARMC9 (2q37.1) / LRRFIP1 (2q37.3)
ARMC9 (2q37.1) / PSMD1 (2q37.1)ARMC9 2q37.1 / EVL 14q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ARMC9   20730
Cards
Entrez_Gene (NCBI)ARMC9    armadillo repeat containing 9
AliasesARM; JBTS30; KU-MEL-1; NS21
GeneCards (Weizmann)ARMC9
Ensembl hg19 (Hinxton)ENSG00000135931 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000135931 [Gene_View]  ENSG00000135931 [Sequence]  chr2:231198631-231345202 [Contig_View]  ARMC9 [Vega]
ICGC DataPortalENSG00000135931
TCGA cBioPortalARMC9
AceView (NCBI)ARMC9
Genatlas (Paris)ARMC9
SOURCE (Princeton)ARMC9
Genetics Home Reference (NIH)ARMC9
Genomic and cartography
GoldenPath hg38 (UCSC)ARMC9  -     chr2:231198631-231345202 +  2q37.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMC9  -     2q37.1   [Description]    (hg19-Feb_2009)
GoldenPathARMC9 - 2q37.1 [CytoView hg19]  ARMC9 - 2q37.1 [CytoView hg38]
ImmunoBaseENSG00000135931
Genome Data Viewer NCBIARMC9 [Mapview hg19]  
OMIM617612   617622   
Gene and transcription
Genbank (Entrez)AB058771 AK022646 AK027163 AK309395 AY219922
RefSeq transcript (Entrez)NM_001271466 NM_001291656 NM_001352754 NM_001352755 NM_001352756 NM_001352757 NM_001352758 NM_001352759 NM_025139
Consensus coding sequences : CCDS (NCBI)ARMC9
Gene ExpressionARMC9 [ NCBI-GEO ]   ARMC9 [ EBI - ARRAY_EXPRESS ]   ARMC9 [ SEEK ]   ARMC9 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMC9 [ Firebrowse - Broad ]
GenevisibleExpression of ARMC9 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)80210
GTEX Portal (Tissue expression)ARMC9
Human Protein AtlasENSG00000135931-ARMC9 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3E5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z3E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3E5
PhosPhoSitePlusQ7Z3E5
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    ARMC9    LisH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
Conserved Domain (NCBI)ARMC9
SuperfamilyQ7Z3E5
AlphaFold pdb e-kbQ7Z3E5   
Human Protein Atlas [tissue]ENSG00000135931-ARMC9 [tissue]
HPRD07778
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3E5
IntAct (EBI)Q7Z3E5
BioGRIDARMC9
STRING (EMBL)ARMC9
ZODIACARMC9
Ontologies - Pathways
QuickGOQ7Z3E5
Ontology : AmiGOcytoplasm  centriole  centriole  ciliary basal body  ciliary basal body  positive regulation of smoothened signaling pathway  cilium assembly  cilium assembly  extracellular exosome  ciliary tip  ciliary tip  
Ontology : EGO-EBIcytoplasm  centriole  centriole  ciliary basal body  ciliary basal body  positive regulation of smoothened signaling pathway  cilium assembly  cilium assembly  extracellular exosome  ciliary tip  ciliary tip  
NDEx NetworkARMC9
Atlas of Cancer Signalling NetworkARMC9
Wikipedia pathwaysARMC9
Orthology - Evolution
OrthoDB80210
GeneTree (enSembl)ENSG00000135931
Phylogenetic Trees/Animal Genes : TreeFamARMC9
Homologs : HomoloGeneARMC9
Homology/Alignments : Family Browser (UCSC)ARMC9
Gene fusions - Rearrangements
Fusion : MitelmanARMC9/EVL [2q37.1/14q32.2]  
Fusion : QuiverARMC9
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC9
dbVarARMC9
ClinVarARMC9
MonarchARMC9
1000_GenomesARMC9 
Exome Variant ServerARMC9
GNOMAD BrowserENSG00000135931
Varsome BrowserARMC9
ACMGARMC9 variants
VarityQ7Z3E5
Genomic Variants (DGV)ARMC9 [DGVbeta]
DECIPHERARMC9 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMC9 
Mutations
ICGC Data PortalARMC9 
TCGA Data PortalARMC9 
Broad Tumor PortalARMC9
OASIS PortalARMC9 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMC9  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARMC9
Mutations and Diseases : HGMDARMC9
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARMC9
DgiDB (Drug Gene Interaction Database)ARMC9
DoCM (Curated mutations)ARMC9
CIViC (Clinical Interpretations of Variants in Cancer)ARMC9
Cancer3DARMC9
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM617612    617622   
Orphanet
DisGeNETARMC9
MedgenARMC9
Genetic Testing Registry ARMC9
NextProtQ7Z3E5 [Medical]
GENETestsARMC9
Target ValidationARMC9
Huge Navigator ARMC9 [HugePedia]
ClinGenARMC9
Clinical trials, drugs, therapy
MyCancerGenomeARMC9
Protein Interactions : CTDARMC9
Pharm GKB GenePA142672581
PharosQ7Z3E5
Clinical trialARMC9
Miscellaneous
canSAR (ICR)ARMC9
HarmonizomeARMC9
DataMed IndexARMC9
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARMC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:10 CEST 2021

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