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ARMC9 (armadillo repeat containing 9)

Identity

Other namesARM
KU-MEL-1
NS21
HGNC (Hugo) ARMC9
LocusID (NCBI) 80210
Atlas_Id 43031
Location 2q37.1
Location_base_pair Starts at 232070913 and ends at 232240590 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2015)
ARMC9 2q37.1 / EVL 14q32.2

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMC9   20730
Cards
Entrez_Gene (NCBI)ARMC9  80210  armadillo repeat containing 9
GeneCards (Weizmann)ARMC9
Ensembl hg19 (Hinxton)ENSG00000135931 [Gene_View]  chr2:232070913-232240590 [Contig_View]  ARMC9 [Vega]
Ensembl hg38 (Hinxton)ENSG00000135931 [Gene_View]  chr2:232070913-232240590 [Contig_View]  ARMC9 [Vega]
ICGC DataPortalENSG00000135931
TCGA cBioPortalARMC9
AceView (NCBI)ARMC9
Genatlas (Paris)ARMC9
WikiGenes80210
SOURCE (Princeton)ARMC9
Genomic and cartography
GoldenPath hg19 (UCSC)ARMC9  -     chr2:232070913-232240590 +  2q37.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMC9  -     2q37.1   [Description]    (hg38-Dec_2013)
EnsemblARMC9 - 2q37.1 [CytoView hg19]  ARMC9 - 2q37.1 [CytoView hg38]
Mapping of homologs : NCBIARMC9 [Mapview hg19]  ARMC9 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AB058771 AK022646 AK027163 AK309395 AM393294
RefSeq transcript (Entrez)NM_001271466 NM_001291656 NM_025139
RefSeq genomic (Entrez)NC_000002 NC_018913 NT_005403 NW_004929305
Consensus coding sequences : CCDS (NCBI)ARMC9
Cluster EST : UnigeneHs.744341 [ NCBI ]
CGAP (NCI)Hs.744341
Alternative Splicing : Fast-db (Paris)GSHG0017265
Alternative Splicing GalleryENSG00000135931
Gene ExpressionARMC9 [ NCBI-GEO ]     ARMC9 [ SEEK ]   ARMC9 [ MEM ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
BioGPS (Tissue expression)80210
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3E5 (Uniprot)
NextProtQ7Z3E5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z3E5
Splice isoforms : SwissVarQ7Z3E5 (Swissvar)
PhosPhoSitePlusQ7Z3E5
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    LisH   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
DMDM Disease mutations80210
Blocks (Seattle)ARMC9
Human Protein AtlasENSG00000135931
Peptide AtlasQ7Z3E5
HPRD07778
IPIIPI00829927   IPI00216484   IPI00003053   IPI00916515   IPI00916087   IPI00916195   IPI00915821   IPI00953532   IPI00916812   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3E5
IntAct (EBI)Q7Z3E5
FunCoupENSG00000135931
BioGRIDARMC9
IntegromeDBARMC9
STRING (EMBL)ARMC9
ZODIACARMC9
Ontologies - Pathways
QuickGOQ7Z3E5
Ontology : AmiGOprotein binding  extracellular exosome  
Ontology : EGO-EBIprotein binding  extracellular exosome  
Protein Interaction DatabaseARMC9
Atlas of Cancer Signalling NetworkARMC9
Wikipedia pathwaysARMC9
Orthology - Evolution
OrthoDB80210
GeneTree (enSembl)ENSG00000135931
Phylogenetic Trees/Animal Genes : TreeFamARMC9
Homologs : HomoloGeneARMC9
Homology/Alignments : Family Browser (UCSC)ARMC9
Gene fusions - Rearrangements
Fusion: TCGAARMC9 2q37.1 EVL 14q32.2 LUAD
Polymorphisms : SNP, variants
NCBI Variation ViewerARMC9 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMC9
dbVarARMC9
ClinVarARMC9
1000_GenomesARMC9 
Exome Variant ServerARMC9
Exome Aggregation Consortium (ExAC)ENSG00000135931
SNP (GeneSNP Utah)ARMC9
SNP : HGBaseARMC9
Genetic variants : HAPMAPARMC9
Genomic Variants (DGV)ARMC9 [DGVbeta]
Mutations
ICGC Data PortalARMC9 
TCGA Data PortalARMC9 
Tumor PortalARMC9
TCGA Copy Number PortalARMC9
Somatic Mutations in Cancer : COSMICARMC9 
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMC9
DgiDB (Drug Gene Interaction Database)ARMC9
DoCM (Curated mutations)ARMC9 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMC9 (select a term)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] 
Diseases
DECIPHER (Syndromes)2:232070913-232240590
CONAN: Copy Number AnalysisARMC9 
Mutations and Diseases : HGMDARMC9
OMIM
MedgenARMC9
NextProtQ7Z3E5 [Medical]
TSGene80210
GENETestsARMC9
Huge Navigator ARMC9 [HugePedia]  ARMC9 [HugeCancerGEM]
snp3D : Map Gene to Disease80210
BioCentury BCIQARMC9
General knowledge
Chemical/Protein Interactions : CTD80210
Chemical/Pharm GKB GenePA142672581
Clinical trialARMC9
Other databases
Probes
Litterature
PubMed23 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMC9
GoPubMedARMC9
iHOPARMC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Sat Jan 16 18:09:55 CET 2016

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