Atlas of Genetics and Cytogenetics in Oncology and Haematology

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ARMC9 (armadillo repeat containing 9)

Identity

Other namesARM
KU-MEL-1
HGNC (Hugo) ARMC9
LocusID (NCBI) 80210
Location 2q37.1
Location_base_pair Starts at 232063294 and ends at 232238606 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARMC9   20730
Entrez_Gene (NCBI)ARMC9  80210  armadillo repeat containing 9
Cards
GeneCards (Weizmann)ARMC9
Ensembl (Hinxton)ENSG00000135931 [Gene_View]  chr2:232063294-232238606 [Contig_View]  ARMC9 [Vega]
AceView (NCBI)ARMC9
Genatlas (Paris)ARMC9
SOURCE (Stanford)NM_001271466 NM_025139
Genomic and cartography
GoldenPath (UCSC)ARMC9  -  2q37.1   chr2:232063294-232238606 +  2q37.1   [Description]    (hg19-Feb_2009)
EnsemblARMC9 - 2q37.1 [CytoView]
Mapping of homologs : NCBIARMC9 [Mapview]
Gene and transcription
Genbank (Entrez)AB058771 AK022646 AK027163 AK309395 AM393294
RefSeq transcript (SRS)NM_001271466 NM_025139
RefSeq transcript (Entrez)NM_001271466 NM_025139
RefSeq genomic (SRS)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838867 NW_004078008
RefSeq genomic (Entrez)AC_000134 NC_000002 NC_018913 NT_005403 NW_001838867 NW_004078008
Consensus coding sequences : CCDS (NCBI)ARMC9
Cluster EST : UnigeneHs.471610 [ SRS ] Hs.471610 [ NCBI ]
CGAP (NCI)Hs.471610
Alternative Splicing : Fast-db (Paris)GSHG0017265
Alternative Splicing GalleryENSG00000135931
Gene ExpressionARMC9 [ NCBI-GEO ]   ARMC9 [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z3E5 (SRS) Q7Z3E5 (Uniprot)
NextProtQ7Z3E5
With graphics : InterProQ7Z3E5
Splice isoforms : SwissVarQ7Z3E5(Swissvar)
Domaine pattern : Prosite (SRS)LISH (PS50896)   
Domaine pattern : Prosite (Expaxy)LISH (PS50896)   
Domains : Interpro (SRS)ARM-like    ARM-type_fold    LisH_dimerisation   
Domains : Interpro (EBI)ARM-like    ARM-type_fold    LisH_dimerisation   
Related proteins : CluSTrQ7Z3E5
Domain families : Pfam (SRS)
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Domain families : Smart (EMBL)LisH (SM00667)  
DMDM80210
Blocks (Seattle)Q7Z3E5
Human Protein AtlasENSG00000135931
HPRD07778
IPIIPI00829927   IPI00216484   IPI00003053   IPI00916515   IPI00916087   IPI00916195   IPI00915821   IPI00953532   IPI00916812   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z3E5
IntAct (EBI)Q7Z3E5
FunCoupENSG00000135931
REACTOMEARMC9
Protein Interaction Database80210
BioGRIDARMC9
InParanoidQ7Z3E5
Interologous Interaction database Q7Z3E5
IntegromeDBARMC9
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARMC9
SNP (GeneSNP Utah)ARMC9
SNP : HGBaseARMC9
Genetic variants : HAPMAPARMC9
Somatic Mutations in Cancer : COSMICARMC9 
CONAN: Copy Number AnalysisARMC9 
Mutations and Diseases : HGMDARMC9
OMIM
GENETests
Disease Genetic AssociationARMC9
Huge Navigator ARMC9 [HugePedia]  ARMC9 [HugeCancerGEM]
Genomic VariantsARMC9  ARMC9 [DGVbeta]
snp3D : Map Gene to Disease80210
General knowledge
Homologs : HomoloGeneARMC9
Homology/Alignments : Family Browser (UCSC)ARMC9
Phylogenetic Trees/Animal Genes : TreeFamARMC9
Chemical/Protein Interactions : CTD80210
Chemical/Pharm GKB GenePA142672581
Clinical trialARMC9
Cancer Resource (Charite)ENSG00000135931
Ontology : AmiGO
Ontology : EGO-EBI
Other databases
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
PubGeneARMC9
iHOPARMC9
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:41:19 CEST 2013
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