Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARMCX4 (armadillo repeat containing, X-linked 4)

Identity

Alias_namesCXorf35
chromosome X open reading frame 35
armadillo repeat containing, X-linked 4 pseudogene
Alias_symbol (synonym)MGC40053
GASP4
Other alias
HGNC (Hugo) ARMCX4
LocusID (NCBI) 100131755
Atlas_Id 60515
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 100743031 and ends at 100750798 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARMCX4 (Xq22.1) / NSD1 (5q35.2)CYSLTR2 (13q14.2) / ARMCX4 (Xq22.1)TCOF1 (5q32) / ARMCX4 (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMCX4   28615
Cards
Entrez_Gene (NCBI)ARMCX4  100131755  armadillo repeat containing, X-linked 4
AliasesCXorf35; GASP4
GeneCards (Weizmann)ARMCX4
Ensembl hg19 (Hinxton)ENSG00000196440 [Gene_View]  chrX:100743031-100750798 [Contig_View]  ARMCX4 [Vega]
Ensembl hg38 (Hinxton)ENSG00000196440 [Gene_View]  chrX:100743031-100750798 [Contig_View]  ARMCX4 [Vega]
ICGC DataPortalENSG00000196440
TCGA cBioPortalARMCX4
AceView (NCBI)ARMCX4
Genatlas (Paris)ARMCX4
WikiGenes100131755
SOURCE (Princeton)ARMCX4
Genetics Home Reference (NIH)ARMCX4
Genomic and cartography
GoldenPath hg19 (UCSC)ARMCX4  -     chrX:100743031-100750798 +  Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMCX4  -     Xq22.1   [Description]    (hg38-Dec_2013)
EnsemblARMCX4 - Xq22.1 [CytoView hg19]  ARMCX4 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIARMCX4 [Mapview hg19]  ARMCX4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK096955 AK125041 AK126987 AK292543 AL050285
RefSeq transcript (Entrez)NM_001256155 NM_152583
RefSeq genomic (Entrez)NC_000023 NC_018934 NG_017196 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)ARMCX4
Cluster EST : UnigeneHs.729062 [ NCBI ]
CGAP (NCI)Hs.729062
Alternative Splicing GalleryENSG00000196440
Gene ExpressionARMCX4 [ NCBI-GEO ]   ARMCX4 [ EBI - ARRAY_EXPRESS ]   ARMCX4 [ SEEK ]   ARMCX4 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMCX4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100131755
GTEX Portal (Tissue expression)ARMCX4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5H9R4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5H9R4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5H9R4
Splice isoforms : SwissVarQ5H9R4
PhosPhoSitePlusQ5H9R4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARMCX4
DMDM Disease mutations100131755
Blocks (Seattle)ARMCX4
SuperfamilyQ5H9R4
Human Protein AtlasENSG00000196440
Peptide AtlasQ5H9R4
IPIIPI00419218   IPI00657914   IPI00552983   IPI00964751   
Protein Interaction databases
DIP (DOE-UCLA)Q5H9R4
IntAct (EBI)Q5H9R4
FunCoupENSG00000196440
BioGRIDARMCX4
STRING (EMBL)ARMCX4
ZODIACARMCX4
Ontologies - Pathways
QuickGOQ5H9R4
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkARMCX4
Atlas of Cancer Signalling NetworkARMCX4
Wikipedia pathwaysARMCX4
Orthology - Evolution
OrthoDB100131755
GeneTree (enSembl)ENSG00000196440
Phylogenetic Trees/Animal Genes : TreeFamARMCX4
HOVERGENQ5H9R4
HOGENOMQ5H9R4
Homologs : HomoloGeneARMCX4
Homology/Alignments : Family Browser (UCSC)ARMCX4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMCX4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMCX4
dbVarARMCX4
ClinVarARMCX4
1000_GenomesARMCX4 
Exome Variant ServerARMCX4
ExAC (Exome Aggregation Consortium)ARMCX4 (select the gene name)
Genetic variants : HAPMAP100131755
Genomic Variants (DGV)ARMCX4 [DGVbeta]
DECIPHER (Syndromes)X:100743031-100750798  ENSG00000196440
CONAN: Copy Number AnalysisARMCX4 
Mutations
ICGC Data PortalARMCX4 
TCGA Data PortalARMCX4 
Broad Tumor PortalARMCX4
OASIS PortalARMCX4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMCX4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMCX4
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ARMCX4
DgiDB (Drug Gene Interaction Database)ARMCX4
DoCM (Curated mutations)ARMCX4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMCX4 (select a term)
intoGenARMCX4
Cancer3DARMCX4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMCX4
Genetic Testing Registry ARMCX4
NextProtQ5H9R4 [Medical]
TSGene100131755
GENETestsARMCX4
Huge Navigator ARMCX4 [HugePedia]
snp3D : Map Gene to Disease100131755
BioCentury BCIQARMCX4
ClinGenARMCX4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100131755
Chemical/Pharm GKB GenePA134971205
Clinical trialARMCX4
Miscellaneous
canSAR (ICR)ARMCX4 (select the gene name)
Probes
Litterature
PubMed10 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMCX4
EVEXARMCX4
GoPubMedARMCX4
iHOPARMCX4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:01 CET 2017

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