Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARMCX5-GPRASP2 (ARMCX5-GPRASP2 readthrough)

Identity

Other alias-
HGNC (Hugo) ARMCX5-GPRASP2
LocusID (NCBI) 100528062
Atlas_Id 60517
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101854276 and ends at 101972661 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARMCX5-GPRASP2 (Xq22.1) / ARMCX5-GPRASP2 (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMCX5-GPRASP2   42000
Cards
Entrez_Gene (NCBI)ARMCX5-GPRASP2  100528062  ARMCX5-GPRASP2 readthrough
Aliases
GeneCards (Weizmann)ARMCX5-GPRASP2
Ensembl hg19 (Hinxton) [Gene_View]  chrX:101854276-101972661 [Contig_View]  ARMCX5-GPRASP2 [Vega]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:101854276-101972661 [Contig_View]  ARMCX5-GPRASP2 [Vega]
TCGA cBioPortalARMCX5-GPRASP2
AceView (NCBI)ARMCX5-GPRASP2
Genatlas (Paris)ARMCX5-GPRASP2
WikiGenes100528062
SOURCE (Princeton)ARMCX5-GPRASP2
Genetics Home Reference (NIH)ARMCX5-GPRASP2
Genomic and cartography
GoldenPath hg19 (UCSC)ARMCX5-GPRASP2  -     chrX:101854276-101972661 +  Xq22.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMCX5-GPRASP2  -     Xq22.1   [Description]    (hg38-Dec_2013)
EnsemblARMCX5-GPRASP2 - Xq22.1 [CytoView hg19]  ARMCX5-GPRASP2 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIARMCX5-GPRASP2 [Mapview hg19]  ARMCX5-GPRASP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG392679
RefSeq transcript (Entrez)NM_001199818
RefSeq genomic (Entrez)NC_000023 NC_018934 NT_011651 NW_004929444
Consensus coding sequences : CCDS (NCBI)ARMCX5-GPRASP2
Cluster EST : UnigeneHs.522729 [ NCBI ]
CGAP (NCI)Hs.522729
Gene ExpressionARMCX5-GPRASP2 [ NCBI-GEO ]   ARMCX5-GPRASP2 [ EBI - ARRAY_EXPRESS ]   ARMCX5-GPRASP2 [ SEEK ]   ARMCX5-GPRASP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMCX5-GPRASP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100528062
GTEX Portal (Tissue expression)ARMCX5-GPRASP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96D09   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96D09  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96D09
Splice isoforms : SwissVarQ96D09
PhosPhoSitePlusQ96D09
Domains : Interpro (EBI)ARM-like    ARM-rpt_dom    ARM-type_fold   
Domain families : Pfam (Sanger)Arm_2 (PF04826)   
Domain families : Pfam (NCBI)pfam04826   
Conserved Domain (NCBI)ARMCX5-GPRASP2
DMDM Disease mutations100528062
Blocks (Seattle)ARMCX5-GPRASP2
SuperfamilyQ96D09
Peptide AtlasQ96D09
IPIIPI00069232   
Protein Interaction databases
DIP (DOE-UCLA)Q96D09
IntAct (EBI)Q96D09
BioGRIDARMCX5-GPRASP2
STRING (EMBL)ARMCX5-GPRASP2
ZODIACARMCX5-GPRASP2
Ontologies - Pathways
QuickGOQ96D09
Ontology : AmiGObeta-amyloid binding  protein binding  cytoplasm  
Ontology : EGO-EBIbeta-amyloid binding  protein binding  cytoplasm  
NDEx NetworkARMCX5-GPRASP2
Atlas of Cancer Signalling NetworkARMCX5-GPRASP2
Wikipedia pathwaysARMCX5-GPRASP2
Orthology - Evolution
OrthoDB100528062
Phylogenetic Trees/Animal Genes : TreeFamARMCX5-GPRASP2
HOVERGENQ96D09
HOGENOMQ96D09
Homologs : HomoloGeneARMCX5-GPRASP2
Homology/Alignments : Family Browser (UCSC)ARMCX5-GPRASP2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMCX5-GPRASP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMCX5-GPRASP2
dbVarARMCX5-GPRASP2
ClinVarARMCX5-GPRASP2
1000_GenomesARMCX5-GPRASP2 
Exome Variant ServerARMCX5-GPRASP2
ExAC (Exome Aggregation Consortium)ARMCX5-GPRASP2 (select the gene name)
Genetic variants : HAPMAP100528062
Genomic Variants (DGV)ARMCX5-GPRASP2 [DGVbeta]
DECIPHER (Syndromes)X:101854276-101972661  
CONAN: Copy Number AnalysisARMCX5-GPRASP2 
Mutations
ICGC Data PortalARMCX5-GPRASP2 
TCGA Data PortalARMCX5-GPRASP2 
Broad Tumor PortalARMCX5-GPRASP2
OASIS PortalARMCX5-GPRASP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDARMCX5-GPRASP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMCX5-GPRASP2
DgiDB (Drug Gene Interaction Database)ARMCX5-GPRASP2
DoCM (Curated mutations)ARMCX5-GPRASP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMCX5-GPRASP2 (select a term)
intoGenARMCX5-GPRASP2
Cancer3DARMCX5-GPRASP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMCX5-GPRASP2
Genetic Testing Registry ARMCX5-GPRASP2
NextProtQ96D09 [Medical]
TSGene100528062
GENETestsARMCX5-GPRASP2
Huge Navigator ARMCX5-GPRASP2 [HugePedia]
snp3D : Map Gene to Disease100528062
BioCentury BCIQARMCX5-GPRASP2
ClinGenARMCX5-GPRASP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100528062
Clinical trialARMCX5-GPRASP2
Miscellaneous
canSAR (ICR)ARMCX5-GPRASP2 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMCX5-GPRASP2
EVEXARMCX5-GPRASP2
GoPubMedARMCX5-GPRASP2
iHOPARMCX5-GPRASP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:01 CET 2017

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