Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARMCX5-GPRASP2 (ARMCX5-GPRASP2 readthrough)

Identity

Other aliasARMCX5-GPRASP2-BHLHB9-LINC00630
bHLHb9
p60TRP
HGNC (Hugo) ARMCX5-GPRASP2
LocusID (NCBI) 100528062
Atlas_Id 60517
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102599348 and ends at 102717733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARMCX5-GPRASP2 (Xq22.1) / ARMCX5-GPRASP2 (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMCX5-GPRASP2   42000
Cards
Entrez_Gene (NCBI)ARMCX5-GPRASP2  100528062  ARMCX5-GPRASP2 readthrough
AliasesARMCX5-GPRASP2-BHLHB9-LINC00630; bHLHb9; p60TRP
GeneCards (Weizmann)ARMCX5-GPRASP2
Ensembl hg19 (Hinxton) [Gene_View]
Ensembl hg38 (Hinxton) [Gene_View]  chrX:102599348-102717733 [Contig_View]  ARMCX5-GPRASP2 [Vega]
TCGA cBioPortalARMCX5-GPRASP2
AceView (NCBI)ARMCX5-GPRASP2
Genatlas (Paris)ARMCX5-GPRASP2
WikiGenes100528062
SOURCE (Princeton)ARMCX5-GPRASP2
Genetics Home Reference (NIH)ARMCX5-GPRASP2
Genomic and cartography
GoldenPath hg38 (UCSC)ARMCX5-GPRASP2  -     chrX:102599348-102717733 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMCX5-GPRASP2  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblARMCX5-GPRASP2 - Xq22.1 [CytoView hg19]  ARMCX5-GPRASP2 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIARMCX5-GPRASP2 [Mapview hg19]  ARMCX5-GPRASP2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)BG392679
RefSeq transcript (Entrez)NM_001199818 NM_001350268 NM_001350269 NM_001350270
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMCX5-GPRASP2
Cluster EST : UnigeneHs.522729 [ NCBI ]
CGAP (NCI)Hs.522729
Gene ExpressionARMCX5-GPRASP2 [ NCBI-GEO ]   ARMCX5-GPRASP2 [ EBI - ARRAY_EXPRESS ]   ARMCX5-GPRASP2 [ SEEK ]   ARMCX5-GPRASP2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMCX5-GPRASP2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)100528062
GTEX Portal (Tissue expression)ARMCX5-GPRASP2
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6PI77   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6PI77  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6PI77
Splice isoforms : SwissVarQ6PI77
PhosPhoSitePlusQ6PI77
Domains : Interpro (EBI)ARM-like    ARM-rpt_dom    ARM-type_fold   
Domain families : Pfam (Sanger)Arm_2 (PF04826)   
Domain families : Pfam (NCBI)pfam04826   
Conserved Domain (NCBI)ARMCX5-GPRASP2
DMDM Disease mutations100528062
Blocks (Seattle)ARMCX5-GPRASP2
SuperfamilyQ6PI77
Peptide AtlasQ6PI77
IPIIPI00069232   
Protein Interaction databases
DIP (DOE-UCLA)Q6PI77
IntAct (EBI)Q6PI77
BioGRIDARMCX5-GPRASP2
STRING (EMBL)ARMCX5-GPRASP2
ZODIACARMCX5-GPRASP2
Ontologies - Pathways
QuickGOQ6PI77
Ontology : AmiGObeta-amyloid binding  protein binding  nucleus  cytoplasm  cytosol  learning or memory  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of neurogenesis  positive regulation of synapse assembly  positive regulation of dendritic spine morphogenesis  extracellular exosome  
Ontology : EGO-EBIbeta-amyloid binding  protein binding  nucleus  cytoplasm  cytosol  learning or memory  protein homodimerization activity  negative regulation of neuron apoptotic process  positive regulation of neurogenesis  positive regulation of synapse assembly  positive regulation of dendritic spine morphogenesis  extracellular exosome  
NDEx NetworkARMCX5-GPRASP2
Atlas of Cancer Signalling NetworkARMCX5-GPRASP2
Wikipedia pathwaysARMCX5-GPRASP2
Orthology - Evolution
OrthoDB100528062
Phylogenetic Trees/Animal Genes : TreeFamARMCX5-GPRASP2
HOVERGENQ6PI77
HOGENOMQ6PI77
Homologs : HomoloGeneARMCX5-GPRASP2
Homology/Alignments : Family Browser (UCSC)ARMCX5-GPRASP2
Gene fusions - Rearrangements
Fusion: Tumor Portal ARMCX5-GPRASP2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMCX5-GPRASP2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMCX5-GPRASP2
dbVarARMCX5-GPRASP2
ClinVarARMCX5-GPRASP2
1000_GenomesARMCX5-GPRASP2 
Exome Variant ServerARMCX5-GPRASP2
ExAC (Exome Aggregation Consortium)
Genetic variants : HAPMAP100528062
Genomic Variants (DGV)ARMCX5-GPRASP2 [DGVbeta]
DECIPHERARMCX5-GPRASP2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMCX5-GPRASP2 
Mutations
ICGC Data PortalARMCX5-GPRASP2 
TCGA Data PortalARMCX5-GPRASP2 
Broad Tumor PortalARMCX5-GPRASP2
OASIS PortalARMCX5-GPRASP2 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDARMCX5-GPRASP2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARMCX5-GPRASP2
DgiDB (Drug Gene Interaction Database)ARMCX5-GPRASP2
DoCM (Curated mutations)ARMCX5-GPRASP2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMCX5-GPRASP2 (select a term)
intoGenARMCX5-GPRASP2
Cancer3DARMCX5-GPRASP2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMCX5-GPRASP2
Genetic Testing Registry ARMCX5-GPRASP2
NextProtQ6PI77 [Medical]
TSGene100528062
GENETestsARMCX5-GPRASP2
Target ValidationARMCX5-GPRASP2
Huge Navigator ARMCX5-GPRASP2 [HugePedia]
snp3D : Map Gene to Disease100528062
BioCentury BCIQARMCX5-GPRASP2
ClinGenARMCX5-GPRASP2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD100528062
Clinical trialARMCX5-GPRASP2
Miscellaneous
canSAR (ICR)ARMCX5-GPRASP2 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMCX5-GPRASP2
EVEXARMCX5-GPRASP2
GoPubMedARMCX5-GPRASP2
iHOPARMCX5-GPRASP2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:38:19 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.