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ARMCX5 (armadillo repeat containing, X-linked 5)

Identity

Alias_symbol (synonym)FLJ12969
GASP5
Other alias
HGNC (Hugo) ARMCX5
LocusID (NCBI) 64860
Atlas_Id 60516
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 102599498 and ends at 102604157 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMCX5   25772
Cards
Entrez_Gene (NCBI)ARMCX5  64860  armadillo repeat containing, X-linked 5
AliasesGASP5
GeneCards (Weizmann)ARMCX5
Ensembl hg19 (Hinxton)ENSG00000125962 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000125962 [Gene_View]  chrX:102599498-102604157 [Contig_View]  ARMCX5 [Vega]
ICGC DataPortalENSG00000125962
TCGA cBioPortalARMCX5
AceView (NCBI)ARMCX5
Genatlas (Paris)ARMCX5
WikiGenes64860
SOURCE (Princeton)ARMCX5
Genetics Home Reference (NIH)ARMCX5
Genomic and cartography
GoldenPath hg38 (UCSC)ARMCX5  -     chrX:102599498-102604157 +  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMCX5  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblARMCX5 - Xq22.1 [CytoView hg19]  ARMCX5 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIARMCX5 [Mapview hg19]  ARMCX5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK023031 AK023444 AK096692 AL537480 BC000792
RefSeq transcript (Entrez)NM_001168478 NM_001168479 NM_001168480 NM_001168482 NM_001168485 NM_022838
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMCX5
Cluster EST : UnigeneHs.522729 [ NCBI ]
CGAP (NCI)Hs.522729
Alternative Splicing GalleryENSG00000125962
Gene ExpressionARMCX5 [ NCBI-GEO ]   ARMCX5 [ EBI - ARRAY_EXPRESS ]   ARMCX5 [ SEEK ]   ARMCX5 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMCX5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64860
GTEX Portal (Tissue expression)ARMCX5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6P1M9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6P1M9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6P1M9
Splice isoforms : SwissVarQ6P1M9
PhosPhoSitePlusQ6P1M9
Domains : Interpro (EBI)ARM-like    ARM-rpt_dom    ARM-type_fold   
Domain families : Pfam (Sanger)Arm_2 (PF04826)   
Domain families : Pfam (NCBI)pfam04826   
Conserved Domain (NCBI)ARMCX5
DMDM Disease mutations64860
Blocks (Seattle)ARMCX5
SuperfamilyQ6P1M9
Human Protein AtlasENSG00000125962
Peptide AtlasQ6P1M9
HPRD06521
IPIIPI00549673   
Protein Interaction databases
DIP (DOE-UCLA)Q6P1M9
IntAct (EBI)Q6P1M9
FunCoupENSG00000125962
BioGRIDARMCX5
STRING (EMBL)ARMCX5
ZODIACARMCX5
Ontologies - Pathways
QuickGOQ6P1M9
Ontology : AmiGOprotein binding  
Ontology : EGO-EBIprotein binding  
NDEx NetworkARMCX5
Atlas of Cancer Signalling NetworkARMCX5
Wikipedia pathwaysARMCX5
Orthology - Evolution
OrthoDB64860
GeneTree (enSembl)ENSG00000125962
Phylogenetic Trees/Animal Genes : TreeFamARMCX5
HOVERGENQ6P1M9
HOGENOMQ6P1M9
Homologs : HomoloGeneARMCX5
Homology/Alignments : Family Browser (UCSC)ARMCX5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMCX5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMCX5
dbVarARMCX5
ClinVarARMCX5
1000_GenomesARMCX5 
Exome Variant ServerARMCX5
ExAC (Exome Aggregation Consortium)ARMCX5 (select the gene name)
Genetic variants : HAPMAP64860
Genomic Variants (DGV)ARMCX5 [DGVbeta]
DECIPHERARMCX5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMCX5 
Mutations
ICGC Data PortalARMCX5 
TCGA Data PortalARMCX5 
Broad Tumor PortalARMCX5
OASIS PortalARMCX5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMCX5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMCX5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ARMCX5
DgiDB (Drug Gene Interaction Database)ARMCX5
DoCM (Curated mutations)ARMCX5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMCX5 (select a term)
intoGenARMCX5
Cancer3DARMCX5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMCX5
Genetic Testing Registry ARMCX5
NextProtQ6P1M9 [Medical]
TSGene64860
GENETestsARMCX5
Target ValidationARMCX5
Huge Navigator ARMCX5 [HugePedia]
snp3D : Map Gene to Disease64860
BioCentury BCIQARMCX5
ClinGenARMCX5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64860
Chemical/Pharm GKB GenePA134910322
Clinical trialARMCX5
Miscellaneous
canSAR (ICR)ARMCX5 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMCX5
EVEXARMCX5
GoPubMedARMCX5
iHOPARMCX5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:47 CEST 2017

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