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ARMCX6 (armadillo repeat containing, X-linked 6)

Identity

Alias_symbol (synonym)FLJ20811
GASP10
Other alias
HGNC (Hugo) ARMCX6
LocusID (NCBI) 54470
Atlas_Id 60518
Location Xq22.1  [Link to chromosome band Xq22]
Location_base_pair Starts at 101615118 and ends at 101618001 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
CADPS2 (7q31.32) / ARMCX6 (Xq22.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMCX6   26094
Cards
Entrez_Gene (NCBI)ARMCX6  54470  armadillo repeat containing, X-linked 6
AliasesGASP10
GeneCards (Weizmann)ARMCX6
Ensembl hg19 (Hinxton)ENSG00000198960 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198960 [Gene_View]  chrX:101615118-101618001 [Contig_View]  ARMCX6 [Vega]
ICGC DataPortalENSG00000198960
TCGA cBioPortalARMCX6
AceView (NCBI)ARMCX6
Genatlas (Paris)ARMCX6
WikiGenes54470
SOURCE (Princeton)ARMCX6
Genetics Home Reference (NIH)ARMCX6
Genomic and cartography
GoldenPath hg38 (UCSC)ARMCX6  -     chrX:101615118-101618001 -  Xq22.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMCX6  -     Xq22.1   [Description]    (hg19-Feb_2009)
EnsemblARMCX6 - Xq22.1 [CytoView hg19]  ARMCX6 - Xq22.1 [CytoView hg38]
Mapping of homologs : NCBIARMCX6 [Mapview hg19]  ARMCX6 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI076820 AK000818 AK097018 AW955663 BC007677
RefSeq transcript (Entrez)NM_001009584 NM_001184768 NM_019007
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMCX6
Cluster EST : UnigeneHs.83530 [ NCBI ]
CGAP (NCI)Hs.83530
Alternative Splicing GalleryENSG00000198960
Gene ExpressionARMCX6 [ NCBI-GEO ]   ARMCX6 [ EBI - ARRAY_EXPRESS ]   ARMCX6 [ SEEK ]   ARMCX6 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMCX6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)54470
GTEX Portal (Tissue expression)ARMCX6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7L4S7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7L4S7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7L4S7
Splice isoforms : SwissVarQ7L4S7
PhosPhoSitePlusQ7L4S7
Domains : Interpro (EBI)ARM-rpt_dom   
Domain families : Pfam (Sanger)Arm_2 (PF04826)   
Domain families : Pfam (NCBI)pfam04826   
Conserved Domain (NCBI)ARMCX6
DMDM Disease mutations54470
Blocks (Seattle)ARMCX6
SuperfamilyQ7L4S7
Human Protein AtlasENSG00000198960
Peptide AtlasQ7L4S7
HPRD06536
IPIIPI00018359   IPI00978269   
Protein Interaction databases
DIP (DOE-UCLA)Q7L4S7
IntAct (EBI)Q7L4S7
FunCoupENSG00000198960
BioGRIDARMCX6
STRING (EMBL)ARMCX6
ZODIACARMCX6
Ontologies - Pathways
QuickGOQ7L4S7
Ontology : AmiGOintegral component of membrane  
Ontology : EGO-EBIintegral component of membrane  
NDEx NetworkARMCX6
Atlas of Cancer Signalling NetworkARMCX6
Wikipedia pathwaysARMCX6
Orthology - Evolution
OrthoDB54470
GeneTree (enSembl)ENSG00000198960
Phylogenetic Trees/Animal Genes : TreeFamARMCX6
HOVERGENQ7L4S7
HOGENOMQ7L4S7
Homologs : HomoloGeneARMCX6
Homology/Alignments : Family Browser (UCSC)ARMCX6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMCX6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMCX6
dbVarARMCX6
ClinVarARMCX6
1000_GenomesARMCX6 
Exome Variant ServerARMCX6
ExAC (Exome Aggregation Consortium)ARMCX6 (select the gene name)
Genetic variants : HAPMAP54470
Genomic Variants (DGV)ARMCX6 [DGVbeta]
DECIPHERARMCX6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMCX6 
Mutations
ICGC Data PortalARMCX6 
TCGA Data PortalARMCX6 
Broad Tumor PortalARMCX6
OASIS PortalARMCX6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMCX6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMCX6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ARMCX6
DgiDB (Drug Gene Interaction Database)ARMCX6
DoCM (Curated mutations)ARMCX6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMCX6 (select a term)
intoGenARMCX6
Cancer3DARMCX6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARMCX6
Genetic Testing Registry ARMCX6
NextProtQ7L4S7 [Medical]
TSGene54470
GENETestsARMCX6
Target ValidationARMCX6
Huge Navigator ARMCX6 [HugePedia]
snp3D : Map Gene to Disease54470
BioCentury BCIQARMCX6
ClinGenARMCX6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD54470
Chemical/Pharm GKB GenePA134869551
Clinical trialARMCX6
Miscellaneous
canSAR (ICR)ARMCX6 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMCX6
EVEXARMCX6
GoPubMedARMCX6
iHOPARMCX6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:47 CEST 2017

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