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ARMS2 (age-related maculopathy susceptibility 2)

Identity

Alias (NCBI)ARMD8
HGNC (Hugo) ARMS2
HGNC Alias symbLOC387715
ARMD8
LocusID (NCBI) 387715
Atlas_Id 56007
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 122454653 and ends at 122457352 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ARMS2   32685
Cards
Entrez_Gene (NCBI)ARMS2    age-related maculopathy susceptibility 2
AliasesARMD8
GeneCards (Weizmann)ARMS2
Ensembl hg19 (Hinxton)ENSG00000254636 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000254636 [Gene_View]  ENSG00000254636 [Sequence]  chr10:122454653-122457352 [Contig_View]  ARMS2 [Vega]
ICGC DataPortalENSG00000254636
TCGA cBioPortalARMS2
AceView (NCBI)ARMS2
Genatlas (Paris)ARMS2
SOURCE (Princeton)ARMS2
Genetics Home Reference (NIH)ARMS2
Genomic and cartography
GoldenPath hg38 (UCSC)ARMS2  -     chr10:122454653-122457352 +  10q26.13   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMS2  -     10q26.13   [Description]    (hg19-Feb_2009)
GoldenPathARMS2 - 10q26.13 [CytoView hg19]  ARMS2 - 10q26.13 [CytoView hg38]
ImmunoBaseENSG00000254636
Genome Data Viewer NCBIARMS2 [Mapview hg19]  
OMIM611313   613778   
Gene and transcription
Genbank (Entrez)BC066349 BC090924 CB997927
RefSeq transcript (Entrez)NM_001099667
Consensus coding sequences : CCDS (NCBI)ARMS2
Gene ExpressionARMS2 [ NCBI-GEO ]   ARMS2 [ EBI - ARRAY_EXPRESS ]   ARMS2 [ SEEK ]   ARMS2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMS2 [ Firebrowse - Broad ]
GenevisibleExpression of ARMS2 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387715
GTEX Portal (Tissue expression)ARMS2
Human Protein AtlasENSG00000254636-ARMS2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7Q2
PhosPhoSitePlusP0C7Q2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARMS2
SuperfamilyP0C7Q2
AlphaFold pdb e-kbP0C7Q2   
Human Protein Atlas [tissue]ENSG00000254636-ARMS2 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)P0C7Q2
IntAct (EBI)P0C7Q2
BioGRIDARMS2
STRING (EMBL)ARMS2
ZODIACARMS2
Ontologies - Pathways
QuickGOP0C7Q2
Ontology : AmiGOretina homeostasis  photoreceptor inner segment  protein binding  mitochondrion  
Ontology : EGO-EBIretina homeostasis  photoreceptor inner segment  protein binding  mitochondrion  
NDEx NetworkARMS2
Atlas of Cancer Signalling NetworkARMS2
Wikipedia pathwaysARMS2
Orthology - Evolution
OrthoDB387715
GeneTree (enSembl)ENSG00000254636
Phylogenetic Trees/Animal Genes : TreeFamARMS2
Homologs : HomoloGeneARMS2
Homology/Alignments : Family Browser (UCSC)ARMS2
Gene fusions - Rearrangements
Fusion : QuiverARMS2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMS2
dbVarARMS2
ClinVarARMS2
MonarchARMS2
1000_GenomesARMS2 
Exome Variant ServerARMS2
GNOMAD BrowserENSG00000254636
Varsome BrowserARMS2
ACMGARMS2 variants
VarityP0C7Q2
Genomic Variants (DGV)ARMS2 [DGVbeta]
DECIPHERARMS2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMS2 
Mutations
ICGC Data PortalARMS2 
TCGA Data PortalARMS2 
Broad Tumor PortalARMS2
OASIS PortalARMS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMS2  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARMS2
Mutations and Diseases : HGMDARMS2
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARMS2
DgiDB (Drug Gene Interaction Database)ARMS2
DoCM (Curated mutations)ARMS2
CIViC (Clinical Interpretations of Variants in Cancer)ARMS2
Cancer3DARMS2
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611313    613778   
Orphanet
DisGeNETARMS2
MedgenARMS2
Genetic Testing Registry ARMS2
NextProtP0C7Q2 [Medical]
GENETestsARMS2
Target ValidationARMS2
Huge Navigator ARMS2 [HugePedia]
ClinGenARMS2
Clinical trials, drugs, therapy
MyCancerGenomeARMS2
Protein Interactions : CTDARMS2
Pharm GKB GenePA162376896
PharosP0C7Q2
Clinical trialARMS2
Miscellaneous
canSAR (ICR)ARMS2
HarmonizomeARMS2
DataMed IndexARMS2
Probes
Litterature
PubMed221 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARMS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:10 CEST 2021

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