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ARMS2 (age-related maculopathy susceptibility 2)

Identity

Alias_symbol (synonym)LOC387715
ARMD8
Other alias
HGNC (Hugo) ARMS2
LocusID (NCBI) 387715
Atlas_Id 56007
Location 10q26.13  [Link to chromosome band 10q26]
Location_base_pair Starts at 124214179 and ends at 124216868 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARMS2   32685
Cards
Entrez_Gene (NCBI)ARMS2  387715  age-related maculopathy susceptibility 2
AliasesARMD8
GeneCards (Weizmann)ARMS2
Ensembl hg19 (Hinxton)ENSG00000254636 [Gene_View]  chr10:124214179-124216868 [Contig_View]  ARMS2 [Vega]
Ensembl hg38 (Hinxton)ENSG00000254636 [Gene_View]  chr10:124214179-124216868 [Contig_View]  ARMS2 [Vega]
ICGC DataPortalENSG00000254636
TCGA cBioPortalARMS2
AceView (NCBI)ARMS2
Genatlas (Paris)ARMS2
WikiGenes387715
SOURCE (Princeton)ARMS2
Genetics Home Reference (NIH)ARMS2
Genomic and cartography
GoldenPath hg19 (UCSC)ARMS2  -     chr10:124214179-124216868 +  10q26.13   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARMS2  -     10q26.13   [Description]    (hg38-Dec_2013)
EnsemblARMS2 - 10q26.13 [CytoView hg19]  ARMS2 - 10q26.13 [CytoView hg38]
Mapping of homologs : NCBIARMS2 [Mapview hg19]  ARMS2 [Mapview hg38]
OMIM611313   613778   
Gene and transcription
Genbank (Entrez)-
RefSeq transcript (Entrez)NM_001099667
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMS2
Cluster EST : UnigeneHs.120359 [ NCBI ]
CGAP (NCI)Hs.120359
Alternative Splicing GalleryENSG00000254636
Gene ExpressionARMS2 [ NCBI-GEO ]   ARMS2 [ EBI - ARRAY_EXPRESS ]   ARMS2 [ SEEK ]   ARMS2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMS2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)387715
GTEX Portal (Tissue expression)ARMS2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP0C7Q2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP0C7Q2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP0C7Q2
Splice isoforms : SwissVarP0C7Q2
PhosPhoSitePlusP0C7Q2
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARMS2
DMDM Disease mutations387715
Blocks (Seattle)ARMS2
SuperfamilyP0C7Q2
Human Protein AtlasENSG00000254636
Peptide AtlasP0C7Q2
IPIIPI00856107   
Protein Interaction databases
DIP (DOE-UCLA)P0C7Q2
IntAct (EBI)P0C7Q2
FunCoupENSG00000254636
BioGRIDARMS2
STRING (EMBL)ARMS2
ZODIACARMS2
Ontologies - Pathways
QuickGOP0C7Q2
Ontology : AmiGOretina homeostasis  photoreceptor inner segment  mitochondrion  
Ontology : EGO-EBIretina homeostasis  photoreceptor inner segment  mitochondrion  
NDEx NetworkARMS2
Atlas of Cancer Signalling NetworkARMS2
Wikipedia pathwaysARMS2
Orthology - Evolution
OrthoDB387715
GeneTree (enSembl)ENSG00000254636
Phylogenetic Trees/Animal Genes : TreeFamARMS2
HOVERGENP0C7Q2
HOGENOMP0C7Q2
Homologs : HomoloGeneARMS2
Homology/Alignments : Family Browser (UCSC)ARMS2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMS2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMS2
dbVarARMS2
ClinVarARMS2
1000_GenomesARMS2 
Exome Variant ServerARMS2
ExAC (Exome Aggregation Consortium)ARMS2 (select the gene name)
Genetic variants : HAPMAP387715
Genomic Variants (DGV)ARMS2 [DGVbeta]
DECIPHER (Syndromes)10:124214179-124216868  ENSG00000254636
CONAN: Copy Number AnalysisARMS2 
Mutations
ICGC Data PortalARMS2 
TCGA Data PortalARMS2 
Broad Tumor PortalARMS2
OASIS PortalARMS2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARMS2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARMS2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)MSeqDR-LSDB Mitochondrial Disease Locus Specific Database
BioMutasearch ARMS2
DgiDB (Drug Gene Interaction Database)ARMS2
DoCM (Curated mutations)ARMS2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMS2 (select a term)
intoGenARMS2
Cancer3DARMS2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611313    613778   
Orphanet
MedgenARMS2
Genetic Testing Registry ARMS2
NextProtP0C7Q2 [Medical]
TSGene387715
GENETestsARMS2
Huge Navigator ARMS2 [HugePedia]
snp3D : Map Gene to Disease387715
BioCentury BCIQARMS2
ClinGenARMS2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD387715
Chemical/Pharm GKB GenePA162376896
Clinical trialARMS2
Miscellaneous
canSAR (ICR)ARMS2 (select the gene name)
Probes
Litterature
PubMed187 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMS2
EVEXARMS2
GoPubMedARMS2
iHOPARMS2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:05 CEST 2017

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