Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARMT1 (acidic residue methyltransferase 1)

Identity

Alias_namesC6orf211
chromosome 6 open reading frame 211
Alias_symbol (synonym)FLJ12910
Other alias
HGNC (Hugo) ARMT1
LocusID (NCBI) 79624
Atlas_Id 52372
Location 6q25.1  [Link to chromosome band 6q25]
Location_base_pair Starts at 151452258 and ends at 151470099 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ESR1 (6q25.1) / ARMT1 (6q25.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


Other Solid tumors implicated (Data extracted from papers in the Atlas) [ 1 ]
  ESR1/ARMT1 (6q25)


External links

Nomenclature
HGNC (Hugo)ARMT1   17872
Cards
Entrez_Gene (NCBI)ARMT1  79624  acidic residue methyltransferase 1
AliasesC6orf211
GeneCards (Weizmann)ARMT1
Ensembl hg19 (Hinxton)ENSG00000146476 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146476 [Gene_View]  ENSG00000146476 [Sequence]  chr6:151452258-151470099 [Contig_View]  ARMT1 [Vega]
ICGC DataPortalENSG00000146476
TCGA cBioPortalARMT1
AceView (NCBI)ARMT1
Genatlas (Paris)ARMT1
WikiGenes79624
SOURCE (Princeton)ARMT1
Genetics Home Reference (NIH)ARMT1
Genomic and cartography
GoldenPath hg38 (UCSC)ARMT1  -     chr6:151452258-151470099 +  6q25.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARMT1  -     6q25.1   [Description]    (hg19-Feb_2009)
EnsemblARMT1 - 6q25.1 [CytoView hg19]  ARMT1 - 6q25.1 [CytoView hg38]
Mapping of homologs : NCBIARMT1 [Mapview hg19]  ARMT1 [Mapview hg38]
OMIM616332   
Gene and transcription
Genbank (Entrez)AJ420548 AK022972 AK298490 AK310840 AL110241
RefSeq transcript (Entrez)NM_001286562 NM_024573
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARMT1
Cluster EST : UnigeneHs.15929 [ NCBI ]
CGAP (NCI)Hs.15929
Alternative Splicing GalleryENSG00000146476
Gene ExpressionARMT1 [ NCBI-GEO ]   ARMT1 [ EBI - ARRAY_EXPRESS ]   ARMT1 [ SEEK ]   ARMT1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARMT1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79624
GTEX Portal (Tissue expression)ARMT1
Human Protein AtlasENSG00000146476-ARMT1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H993   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H993  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H993
Splice isoforms : SwissVarQ9H993
PhosPhoSitePlusQ9H993
Domains : Interpro (EBI)AF1104-like_sf    DUF89   
Domain families : Pfam (Sanger)DUF89 (PF01937)   
Domain families : Pfam (NCBI)pfam01937   
Conserved Domain (NCBI)ARMT1
DMDM Disease mutations79624
Blocks (Seattle)ARMT1
SuperfamilyQ9H993
Human Protein Atlas [tissue]ENSG00000146476-ARMT1 [tissue]
Peptide AtlasQ9H993
HPRD09854
IPIIPI00002270   IPI01014584   IPI00977478   
Protein Interaction databases
DIP (DOE-UCLA)Q9H993
IntAct (EBI)Q9H993
FunCoupENSG00000146476
BioGRIDARMT1
STRING (EMBL)ARMT1
ZODIACARMT1
Ontologies - Pathways
QuickGOQ9H993
Ontology : AmiGOprotein binding  protein methylation  cellular response to DNA damage stimulus  S-adenosylmethionine-dependent methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  enzyme binding  methylation  protein carboxyl O-methyltransferase activity  protein carboxyl O-methyltransferase activity  regulation of response to DNA damage stimulus  
Ontology : EGO-EBIprotein binding  protein methylation  cellular response to DNA damage stimulus  S-adenosylmethionine-dependent methyltransferase activity  S-adenosylmethionine-dependent methyltransferase activity  enzyme binding  methylation  protein carboxyl O-methyltransferase activity  protein carboxyl O-methyltransferase activity  regulation of response to DNA damage stimulus  
NDEx NetworkARMT1
Atlas of Cancer Signalling NetworkARMT1
Wikipedia pathwaysARMT1
Orthology - Evolution
OrthoDB79624
GeneTree (enSembl)ENSG00000146476
Phylogenetic Trees/Animal Genes : TreeFamARMT1
HOVERGENQ9H993
HOGENOMQ9H993
Homologs : HomoloGeneARMT1
Homology/Alignments : Family Browser (UCSC)ARMT1
Gene fusions - Rearrangements
Fusion : MitelmanESR1/ARMT1 [6q25.1/6q25.1]  [t(6;6)(q25;q25)]  
Fusion : QuiverARMT1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARMT1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARMT1
dbVarARMT1
ClinVarARMT1
1000_GenomesARMT1 
Exome Variant ServerARMT1
ExAC (Exome Aggregation Consortium)ENSG00000146476
GNOMAD BrowserENSG00000146476
Varsome BrowserARMT1
Genetic variants : HAPMAP79624
Genomic Variants (DGV)ARMT1 [DGVbeta]
DECIPHERARMT1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARMT1 
Mutations
ICGC Data PortalARMT1 
TCGA Data PortalARMT1 
Broad Tumor PortalARMT1
OASIS PortalARMT1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDARMT1
BioMutasearch ARMT1
DgiDB (Drug Gene Interaction Database)ARMT1
DoCM (Curated mutations)ARMT1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARMT1 (select a term)
intoGenARMT1
Cancer3DARMT1(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616332   
Orphanet
DisGeNETARMT1
MedgenARMT1
Genetic Testing Registry ARMT1
NextProtQ9H993 [Medical]
TSGene79624
GENETestsARMT1
Target ValidationARMT1
Huge Navigator ARMT1 [HugePedia]
snp3D : Map Gene to Disease79624
BioCentury BCIQARMT1
ClinGenARMT1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79624
Chemical/Pharm GKB GenePA134870747
Clinical trialARMT1
Miscellaneous
canSAR (ICR)ARMT1 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARMT1
EVEXARMT1
GoPubMedARMT1
iHOPARMT1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Nov 6 10:52:25 CET 2018

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.