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ARNTL (aryl hydrocarbon receptor nuclear translocator like)

Identity

Alias (NCBI)BMAL1
BMAL1c
JAP3
MOP3
PASD3
TIC
bHLHe5
HGNC (Hugo) ARNTL
HGNC Alias symbMOP3
JAP3
BMAL1
PASD3
bHLHe5
HGNC Alias namebrain and muscle ARNT-like 1
 basic helix-loop-helix family member e5
 PAS domain containing 3
LocusID (NCBI) 406
Atlas_Id 51125
Location 11p15.3  [Link to chromosome band 11p15]
Location_base_pair Starts at 13277727 and ends at 13387265 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARNTL (11p15.2) / ARNTL (11p15.2)ARNTL (11p15.2) / FN1 (2q35)ARNTL (11p15.2) / TEAD1 (11p15.3)
PHYKPL (5q35.3) / ARNTL (11p15.2)ARNTL 11p15.2 / TEAD1 11p15.3

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

Nomenclature
HGNC (Hugo)ARNTL   701
Cards
Entrez_Gene (NCBI)ARNTL    aryl hydrocarbon receptor nuclear translocator like
AliasesBMAL1; BMAL1c; JAP3; MOP3; 
PASD3; TIC; bHLHe5
GeneCards (Weizmann)ARNTL
Ensembl hg19 (Hinxton)ENSG00000133794 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000133794 [Gene_View]  ENSG00000133794 [Sequence]  chr11:13277727-13387265 [Contig_View]  ARNTL [Vega]
ICGC DataPortalENSG00000133794
TCGA cBioPortalARNTL
AceView (NCBI)ARNTL
Genatlas (Paris)ARNTL
SOURCE (Princeton)ARNTL
Genetics Home Reference (NIH)ARNTL
Genomic and cartography
GoldenPath hg38 (UCSC)ARNTL  -     chr11:13277727-13387265 +  11p15.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARNTL  -     11p15.3   [Description]    (hg19-Feb_2009)
GoldenPathARNTL - 11p15.3 [CytoView hg19]  ARNTL - 11p15.3 [CytoView hg38]
ImmunoBaseENSG00000133794
Genome Data Viewer NCBIARNTL [Mapview hg19]  
OMIM602550   
Gene and transcription
Genbank (Entrez)AB000812 AB000814 AB000815 AB000816 AF044288
RefSeq transcript (Entrez)NM_001030272 NM_001030273 NM_001178 NM_001297719 NM_001297722 NM_001297724 NM_001351804 NM_001351805 NM_001351806 NM_001351807 NM_001351808 NM_001351809 NM_001351810 NM_001351811 NM_001351812 NM_001351813 NM_001351814 NM_001351815 NM_001351816 NM_001351817 NM_001351818 NM_001351819 NM_001351820 NM_001351821 NM_001351822 NM_001351823 NM_001351824
Consensus coding sequences : CCDS (NCBI)ARNTL
Gene ExpressionARNTL [ NCBI-GEO ]   ARNTL [ EBI - ARRAY_EXPRESS ]   ARNTL [ SEEK ]   ARNTL [ MEM ]
Gene Expression Viewer (FireBrowse)ARNTL [ Firebrowse - Broad ]
GenevisibleExpression of ARNTL in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)406
GTEX Portal (Tissue expression)ARNTL
Human Protein AtlasENSG00000133794-ARNTL [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARNTL
Human Protein Atlas [tissue]ENSG00000133794-ARNTL [tissue]
HPRD03973
Protein Interaction databases
BioGRIDARNTL
STRING (EMBL)ARNTL
ZODIACARNTL
Ontologies - Pathways
Litterature
PubMed202 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARNTL
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Mon Oct 4 15:00:11 CEST 2021

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