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ARPC1A (actin related protein 2/3 complex, subunit 1A, 41kDa)

Identity

Other namesArc40
SOP2Hs
SOP2L
HGNC (Hugo) ARPC1A
LocusID (NCBI) 10552
Location 7q22.1
Location_base_pair Starts at 98923496 and ends at 98963885 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARPC1A   703
Entrez_Gene (NCBI)ARPC1A  10552  actin related protein 2/3 complex, subunit 1A, 41kDa
Cards
GeneCards (Weizmann)ARPC1A
Ensembl (Hinxton)ENSG00000241685 [Gene_View]  chr7:98923496-98963885 [Contig_View]  ARPC1A [Vega]
AceView (NCBI)ARPC1A
Genatlas (Paris)ARPC1A
SOURCE (Stanford)NM_001190996 NM_006409
Genomic and cartography
GoldenPath (UCSC)ARPC1A  -  7q22.1   chr7:98923496-98963885 +  7q22.1   [Description]    (hg19-Feb_2009)
EnsemblARPC1A - 7q22.1 [CytoView]
Mapping of homologs : NCBIARPC1A [Mapview]
OMIM604220   
Gene and transcription
Genbank (Entrez)AB209059 AK223015 BC006445 BC039594 BC047889
RefSeq transcript (SRS)NM_001190996 NM_006409
RefSeq transcript (Entrez)NM_001190996 NM_006409
RefSeq genomic (SRS)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079595 NW_001839065 NW_004078032
RefSeq genomic (Entrez)AC_000068 AC_000139 NC_000007 NC_018918 NT_007933 NT_079595 NW_001839065 NW_004078032
Consensus coding sequences : CCDS (NCBI)ARPC1A
Cluster EST : UnigeneHs.124126 [ SRS ] Hs.124126 [ NCBI ]
CGAP (NCI)Hs.124126
Alternative Splicing : Fast-db (Paris)GSHG0027550
Alternative Splicing GalleryENSG00000241685
Gene ExpressionARPC1A [ NCBI-GEO ]   ARPC1A [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ92747 (SRS) Q92747 (Uniprot)
NextProtQ92747
With graphics : InterProQ92747
Splice isoforms : SwissVarQ92747(Swissvar)
Domaine pattern : Prosite (SRS)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domaine pattern : Prosite (Expaxy)WD_REPEATS_1 (PS00678)    WD_REPEATS_2 (PS50082)    WD_REPEATS_REGION (PS50294)   
Domains : Interpro (SRS)ARPC2/3_su1    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Domains : Interpro (EBI)ARPC2/3_su1    WD40/YVTN_repeat-like_dom    WD40_repeat    WD40_repeat_dom   
Related proteins : CluSTrQ92747
Domain families : Pfam (SRS)WD40 (PF00400)   
Domain families : Pfam (Sanger)WD40 (PF00400)   
Domain families : Pfam (NCBI)pfam00400   
Domain families : Smart (EMBL)WD40 (SM00320)  
DMDM10552
Blocks (Seattle)Q92747
Human Protein AtlasENSG00000241685
HPRD07252
IPIIPI00333068   IPI00909730   IPI00983530   IPI00927330   IPI00926706   
Protein Interaction databases
DIP (DOE-UCLA)Q92747
IntAct (EBI)Q92747
FunCoupENSG00000241685
REACTOMEARPC1A
Protein Interaction Database10552
BioGRIDARPC1A
InParanoidQ92747
Interologous Interaction database Q92747
IntegromeDBARPC1A
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARPC1A
SNP (GeneSNP Utah)ARPC1A
SNP : HGBaseARPC1A
Genetic variants : HAPMAPARPC1A
Somatic Mutations in Cancer : COSMICARPC1A 
CONAN: Copy Number AnalysisARPC1A 
Mutations and Diseases : HGMDARPC1A
OMIM604220   
GENETests604220   
Disease Genetic AssociationARPC1A
Huge Navigator ARPC1A [HugePedia]  ARPC1A [HugeCancerGEM]
Genomic VariantsARPC1A  ARPC1A [DGVbeta]
snp3D : Map Gene to Disease10552
General knowledge
Homologs : HomoloGeneARPC1A
Homology/Alignments : Family Browser (UCSC)ARPC1A
Phylogenetic Trees/Animal Genes : TreeFamARPC1A
Chemical/Protein Interactions : CTD10552
Chemical/Pharm GKB GenePA24997
Clinical trialARPC1A
Cancer Resource (Charite)ENSG00000241685
Ontology : AmiGOactin binding  cytoplasm  actin cytoskeleton  actin cytoskeleton organization  regulation of actin filament polymerization  
Ontology : EGO-EBIactin binding  cytoplasm  actin cytoskeleton  actin cytoskeleton organization  regulation of actin filament polymerization  
Pathways : KEGGRegulation of actin cytoskeleton
Other databases
Probes
Litterature
PubMed21 Pubmed reference(s) in Entrez
PubGeneARPC1A
iHOPARPC1A
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:29:32 CEST 2013
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