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ARPC5L (actin related protein 2/3 complex, subunit 5-like)

Identity

Alias_namesactin related protein 2/3 complex subunit 5-like
Alias_symbol (synonym)MGC3038
ARC16-2
Other alias
HGNC (Hugo) ARPC5L
LocusID (NCBI) 81873
Atlas_Id 60523
Location 9q33.3  [Link to chromosome band 9q33]
Location_base_pair Starts at 127631484 and ends at 127639696 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARPC5L   23366
Cards
Entrez_Gene (NCBI)ARPC5L  81873  actin related protein 2/3 complex, subunit 5-like
AliasesARC16-2
GeneCards (Weizmann)ARPC5L
Ensembl hg19 (Hinxton)ENSG00000136950 [Gene_View]  chr9:127631484-127639696 [Contig_View]  ARPC5L [Vega]
Ensembl hg38 (Hinxton)ENSG00000136950 [Gene_View]  chr9:127631484-127639696 [Contig_View]  ARPC5L [Vega]
ICGC DataPortalENSG00000136950
TCGA cBioPortalARPC5L
AceView (NCBI)ARPC5L
Genatlas (Paris)ARPC5L
WikiGenes81873
SOURCE (Princeton)ARPC5L
Genetics Home Reference (NIH)ARPC5L
Genomic and cartography
GoldenPath hg19 (UCSC)ARPC5L  -     chr9:127631484-127639696 +  9q33.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARPC5L  -     9q33.3   [Description]    (hg38-Dec_2013)
EnsemblARPC5L - 9q33.3 [CytoView hg19]  ARPC5L - 9q33.3 [CytoView hg38]
Mapping of homologs : NCBIARPC5L [Mapview hg19]  ARPC5L [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF087842 AK023881 AK056174 AK308570 AK315604
RefSeq transcript (Entrez)NM_030978
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929366
Consensus coding sequences : CCDS (NCBI)ARPC5L
Cluster EST : UnigeneHs.132499 [ NCBI ]
CGAP (NCI)Hs.132499
Alternative Splicing GalleryENSG00000136950
Gene ExpressionARPC5L [ NCBI-GEO ]   ARPC5L [ EBI - ARRAY_EXPRESS ]   ARPC5L [ SEEK ]   ARPC5L [ MEM ]
Gene Expression Viewer (FireBrowse)ARPC5L [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)81873
GTEX Portal (Tissue expression)ARPC5L
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9BPX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9BPX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9BPX5
Splice isoforms : SwissVarQ9BPX5
PhosPhoSitePlusQ9BPX5
Domains : Interpro (EBI)ARPC5    ARPC5L   
Domain families : Pfam (Sanger)P16-Arc (PF04699)   
Domain families : Pfam (NCBI)pfam04699   
Conserved Domain (NCBI)ARPC5L
DMDM Disease mutations81873
Blocks (Seattle)ARPC5L
SuperfamilyQ9BPX5
Human Protein AtlasENSG00000136950
Peptide AtlasQ9BPX5
HPRD12490
IPIIPI00414554   
Protein Interaction databases
DIP (DOE-UCLA)Q9BPX5
IntAct (EBI)Q9BPX5
FunCoupENSG00000136950
BioGRIDARPC5L
STRING (EMBL)ARPC5L
ZODIACARPC5L
Ontologies - Pathways
QuickGOQ9BPX5
Ontology : AmiGOmolecular_function  actin binding  cytoplasm  Arp2/3 protein complex  focal adhesion  biological_process  Arp2/3 complex-mediated actin nucleation  extracellular exosome  
Ontology : EGO-EBImolecular_function  actin binding  cytoplasm  Arp2/3 protein complex  focal adhesion  biological_process  Arp2/3 complex-mediated actin nucleation  extracellular exosome  
Pathways : KEGGFc gamma R-mediated phagocytosis    Regulation of actin cytoskeleton    Bacterial invasion of epithelial cells    Pathogenic Escherichia coli infection    Shigellosis    Salmonella infection   
NDEx NetworkARPC5L
Atlas of Cancer Signalling NetworkARPC5L
Wikipedia pathwaysARPC5L
Orthology - Evolution
OrthoDB81873
GeneTree (enSembl)ENSG00000136950
Phylogenetic Trees/Animal Genes : TreeFamARPC5L
HOVERGENQ9BPX5
HOGENOMQ9BPX5
Homologs : HomoloGeneARPC5L
Homology/Alignments : Family Browser (UCSC)ARPC5L
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARPC5L [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARPC5L
dbVarARPC5L
ClinVarARPC5L
1000_GenomesARPC5L 
Exome Variant ServerARPC5L
ExAC (Exome Aggregation Consortium)ARPC5L (select the gene name)
Genetic variants : HAPMAP81873
Genomic Variants (DGV)ARPC5L [DGVbeta]
DECIPHER (Syndromes)9:127631484-127639696  ENSG00000136950
CONAN: Copy Number AnalysisARPC5L 
Mutations
ICGC Data PortalARPC5L 
TCGA Data PortalARPC5L 
Broad Tumor PortalARPC5L
OASIS PortalARPC5L [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARPC5L  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARPC5L
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARPC5L
DgiDB (Drug Gene Interaction Database)ARPC5L
DoCM (Curated mutations)ARPC5L (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARPC5L (select a term)
intoGenARPC5L
Cancer3DARPC5L(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARPC5L
Genetic Testing Registry ARPC5L
NextProtQ9BPX5 [Medical]
TSGene81873
GENETestsARPC5L
Huge Navigator ARPC5L [HugePedia]
snp3D : Map Gene to Disease81873
BioCentury BCIQARPC5L
ClinGenARPC5L
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD81873
Chemical/Pharm GKB GenePA134991012
Clinical trialARPC5L
Miscellaneous
canSAR (ICR)ARPC5L (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARPC5L
EVEXARPC5L
GoPubMedARPC5L
iHOPARPC5L
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:03 CET 2017

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