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ARPIN (actin related protein 2/3 complex inhibitor)

Identity

Alias_namesC15orf38
chromosome 15 open reading frame 38
Alias_symbol (synonym)MGC61550
Other alias
HGNC (Hugo) ARPIN
LocusID (NCBI) 348110
Atlas_Id 55646
Location 15q26.1  [Link to chromosome band 15q26]
Location_base_pair Starts at 89896532 and ends at 89912687 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARPIN   28782
Cards
Entrez_Gene (NCBI)ARPIN  348110  actin related protein 2/3 complex inhibitor
AliasesC15orf38
GeneCards (Weizmann)ARPIN
Ensembl hg19 (Hinxton)ENSG00000242498 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000242498 [Gene_View]  chr15:89896532-89912687 [Contig_View]  ARPIN [Vega]
ICGC DataPortalENSG00000242498
TCGA cBioPortalARPIN
AceView (NCBI)ARPIN
Genatlas (Paris)ARPIN
WikiGenes348110
SOURCE (Princeton)ARPIN
Genetics Home Reference (NIH)ARPIN
Genomic and cartography
GoldenPath hg38 (UCSC)ARPIN  -     chr15:89896532-89912687 -  15q26.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARPIN  -     15q26.1   [Description]    (hg19-Feb_2009)
EnsemblARPIN - 15q26.1 [CytoView hg19]  ARPIN - 15q26.1 [CytoView hg38]
Mapping of homologs : NCBIARPIN [Mapview hg19]  ARPIN [Mapview hg38]
OMIM615543   
Gene and transcription
Genbank (Entrez)AK055252 AK093274 BC053602 BM023230 DB285255
RefSeq transcript (Entrez)NM_001282380 NM_182616
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARPIN
Cluster EST : UnigeneHs.744890 [ NCBI ]
CGAP (NCI)Hs.744890
Alternative Splicing GalleryENSG00000242498
Gene ExpressionARPIN [ NCBI-GEO ]   ARPIN [ EBI - ARRAY_EXPRESS ]   ARPIN [ SEEK ]   ARPIN [ MEM ]
Gene Expression Viewer (FireBrowse)ARPIN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)348110
GTEX Portal (Tissue expression)ARPIN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7Z6K5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7Z6K5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7Z6K5
Splice isoforms : SwissVarQ7Z6K5
PhosPhoSitePlusQ7Z6K5
Domains : Interpro (EBI)UPF0552   
Domain families : Pfam (Sanger)UPF0552 (PF10574)   
Domain families : Pfam (NCBI)pfam10574   
Conserved Domain (NCBI)ARPIN
DMDM Disease mutations348110
Blocks (Seattle)ARPIN
PDB (SRS)4Z68   
PDB (PDBSum)4Z68   
PDB (IMB)4Z68   
PDB (RSDB)4Z68   
Structural Biology KnowledgeBase4Z68   
SCOP (Structural Classification of Proteins)4Z68   
CATH (Classification of proteins structures)4Z68   
SuperfamilyQ7Z6K5
Human Protein AtlasENSG00000242498
Peptide AtlasQ7Z6K5
HPRD14697
IPIIPI00074225   
Protein Interaction databases
DIP (DOE-UCLA)Q7Z6K5
IntAct (EBI)Q7Z6K5
FunCoupENSG00000242498
BioGRIDARPIN
STRING (EMBL)ARPIN
ZODIACARPIN
Ontologies - Pathways
QuickGOQ7Z6K5
Ontology : AmiGOprotein binding  lamellipodium  negative regulation of cell migration  directional locomotion  negative regulation of actin nucleation  negative regulation of lamellipodium morphogenesis  
Ontology : EGO-EBIprotein binding  lamellipodium  negative regulation of cell migration  directional locomotion  negative regulation of actin nucleation  negative regulation of lamellipodium morphogenesis  
NDEx NetworkARPIN
Atlas of Cancer Signalling NetworkARPIN
Wikipedia pathwaysARPIN
Orthology - Evolution
OrthoDB348110
GeneTree (enSembl)ENSG00000242498
Phylogenetic Trees/Animal Genes : TreeFamARPIN
HOVERGENQ7Z6K5
HOGENOMQ7Z6K5
Homologs : HomoloGeneARPIN
Homology/Alignments : Family Browser (UCSC)ARPIN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARPIN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARPIN
dbVarARPIN
ClinVarARPIN
1000_GenomesARPIN 
Exome Variant ServerARPIN
ExAC (Exome Aggregation Consortium)ARPIN (select the gene name)
Genetic variants : HAPMAP348110
Genomic Variants (DGV)ARPIN [DGVbeta]
DECIPHERARPIN [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARPIN 
Mutations
ICGC Data PortalARPIN 
TCGA Data PortalARPIN 
Broad Tumor PortalARPIN
OASIS PortalARPIN [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDARPIN
BioMutasearch ARPIN
DgiDB (Drug Gene Interaction Database)ARPIN
DoCM (Curated mutations)ARPIN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARPIN (select a term)
intoGenARPIN
Cancer3DARPIN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615543   
Orphanet
MedgenARPIN
Genetic Testing Registry ARPIN
NextProtQ7Z6K5 [Medical]
TSGene348110
GENETestsARPIN
Target ValidationARPIN
Huge Navigator ARPIN [HugePedia]
snp3D : Map Gene to Disease348110
BioCentury BCIQARPIN
ClinGenARPIN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD348110
Chemical/Pharm GKB GenePA142672274
Clinical trialARPIN
Miscellaneous
canSAR (ICR)ARPIN (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARPIN
EVEXARPIN
GoPubMedARPIN
iHOPARPIN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 12:24:32 CEST 2017

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