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ARPP21 (cAMP regulated phosphoprotein 21)

Identity

Alias_namescAMP-regulated phosphoprotein, 21kDa
Alias_symbol (synonym)ARPP-21
TARPP
R3HDM3
Other aliasRCS
HGNC (Hugo) ARPP21
LocusID (NCBI) 10777
Atlas_Id 60525
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 35679624 and ends at 35685887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARPP21 (3p22.3) / ARPP21 (3p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARPP21   16968
Cards
Entrez_Gene (NCBI)ARPP21  10777  cAMP regulated phosphoprotein 21
AliasesARPP-21; R3HDM3; RCS; TARPP
GeneCards (Weizmann)ARPP21
Ensembl hg19 (Hinxton)ENSG00000172995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172995 [Gene_View]  chr3:35679624-35685887 [Contig_View]  ARPP21 [Vega]
ICGC DataPortalENSG00000172995
TCGA cBioPortalARPP21
AceView (NCBI)ARPP21
Genatlas (Paris)ARPP21
WikiGenes10777
SOURCE (Princeton)ARPP21
Genetics Home Reference (NIH)ARPP21
Genomic and cartography
GoldenPath hg38 (UCSC)ARPP21  -     chr3:35679624-35685887 +  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARPP21  -     3p22.3   [Description]    (hg19-Feb_2009)
EnsemblARPP21 - 3p22.3 [CytoView hg19]  ARPP21 - 3p22.3 [CytoView hg38]
Mapping of homologs : NCBIARPP21 [Mapview hg19]  ARPP21 [Mapview hg38]
OMIM605488   
Gene and transcription
Genbank (Entrez)AF112220 AK055064 AK091377 AK093648 AK289649
RefSeq transcript (Entrez)NM_001025068 NM_001025069 NM_001267616 NM_001267617 NM_001267618 NM_001267619 NM_016300 NM_198399
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARPP21
Cluster EST : UnigeneHs.475902 [ NCBI ]
CGAP (NCI)Hs.475902
Alternative Splicing GalleryENSG00000172995
Gene ExpressionARPP21 [ NCBI-GEO ]   ARPP21 [ EBI - ARRAY_EXPRESS ]   ARPP21 [ SEEK ]   ARPP21 [ MEM ]
Gene Expression Viewer (FireBrowse)ARPP21 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10777
GTEX Portal (Tissue expression)ARPP21
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBL0
Splice isoforms : SwissVarQ9UBL0
PhosPhoSitePlusQ9UBL0
Domaine pattern : Prosite (Expaxy)R3H (PS51061)    SUZ (PS51673)   
Domains : Interpro (EBI)R3H_dom    SUZ   
Domain families : Pfam (Sanger)R3H (PF01424)    SUZ (PF12752)   
Domain families : Pfam (NCBI)pfam01424    pfam12752   
Domain families : Smart (EMBL)R3H (SM00393)  
Conserved Domain (NCBI)ARPP21
DMDM Disease mutations10777
Blocks (Seattle)ARPP21
SuperfamilyQ9UBL0
Human Protein AtlasENSG00000172995
Peptide AtlasQ9UBL0
HPRD09265
IPIIPI00384250   IPI00418646   IPI00796479   IPI00790973   IPI00873467   IPI00654599   IPI00976512   IPI00924888   IPI00926508   IPI00927705   IPI00926748   IPI00926973   IPI00924491   IPI00952967   IPI00925839   IPI00926029   IPI00924889   IPI00925101   IPI00924465   IPI00924662   
Protein Interaction databases
DIP (DOE-UCLA)Q9UBL0
IntAct (EBI)Q9UBL0
FunCoupENSG00000172995
BioGRIDARPP21
STRING (EMBL)ARPP21
ZODIACARPP21
Ontologies - Pathways
QuickGOQ9UBL0
Ontology : AmiGOmolecular_function  nucleic acid binding  calmodulin binding  cellular_component  cytoplasm  biological_process  cellular response to heat  
Ontology : EGO-EBImolecular_function  nucleic acid binding  calmodulin binding  cellular_component  cytoplasm  biological_process  cellular response to heat  
NDEx NetworkARPP21
Atlas of Cancer Signalling NetworkARPP21
Wikipedia pathwaysARPP21
Orthology - Evolution
OrthoDB10777
GeneTree (enSembl)ENSG00000172995
Phylogenetic Trees/Animal Genes : TreeFamARPP21
HOVERGENQ9UBL0
HOGENOMQ9UBL0
Homologs : HomoloGeneARPP21
Homology/Alignments : Family Browser (UCSC)ARPP21
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARPP21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARPP21
dbVarARPP21
ClinVarARPP21
1000_GenomesARPP21 
Exome Variant ServerARPP21
ExAC (Exome Aggregation Consortium)ARPP21 (select the gene name)
Genetic variants : HAPMAP10777
Genomic Variants (DGV)ARPP21 [DGVbeta]
DECIPHERARPP21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARPP21 
Mutations
ICGC Data PortalARPP21 
TCGA Data PortalARPP21 
Broad Tumor PortalARPP21
OASIS PortalARPP21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARPP21  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARPP21
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARPP21
DgiDB (Drug Gene Interaction Database)ARPP21
DoCM (Curated mutations)ARPP21 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARPP21 (select a term)
intoGenARPP21
Cancer3DARPP21(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605488   
Orphanet
MedgenARPP21
Genetic Testing Registry ARPP21
NextProtQ9UBL0 [Medical]
TSGene10777
GENETestsARPP21
Target ValidationARPP21
Huge Navigator ARPP21 [HugePedia]
snp3D : Map Gene to Disease10777
BioCentury BCIQARPP21
ClinGenARPP21
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD10777
Chemical/Pharm GKB GenePA166048949
Clinical trialARPP21
Miscellaneous
canSAR (ICR)ARPP21 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARPP21
EVEXARPP21
GoPubMedARPP21
iHOPARPP21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:48 CEST 2017

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