Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ARPP21 (cAMP regulated phosphoprotein 21)

Identity

Alias (NCBI)ARPP-21
R3HDM3
RCS
TARPP
HGNC (Hugo) ARPP21
HGNC Alias symbARPP-21
TARPP
R3HDM3
HGNC Alias nameR3H domain containing 3
HGNC Previous namecAMP-regulated phosphoprotein, 21kDa
LocusID (NCBI) 10777
Atlas_Id 60525
Location 3p22.3  [Link to chromosome band 3p22]
Location_base_pair Starts at 35680940 and ends at 35685887 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARPP21 (3p22.3) / ARPP21 (3p22.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ARPP21   16968
Cards
Entrez_Gene (NCBI)ARPP21    cAMP regulated phosphoprotein 21
AliasesARPP-21; R3HDM3; RCS; TARPP
GeneCards (Weizmann)ARPP21
Ensembl hg19 (Hinxton)ENSG00000172995 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000172995 [Gene_View]  ENSG00000172995 [Sequence]  chr3:35680940-35685887 [Contig_View]  ARPP21 [Vega]
ICGC DataPortalENSG00000172995
TCGA cBioPortalARPP21
AceView (NCBI)ARPP21
Genatlas (Paris)ARPP21
SOURCE (Princeton)ARPP21
Genetics Home Reference (NIH)ARPP21
Genomic and cartography
GoldenPath hg38 (UCSC)ARPP21  -     chr3:35680940-35685887 +  3p22.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARPP21  -     3p22.3   [Description]    (hg19-Feb_2009)
GoldenPathARPP21 - 3p22.3 [CytoView hg19]  ARPP21 - 3p22.3 [CytoView hg38]
ImmunoBaseENSG00000172995
Genome Data Viewer NCBIARPP21 [Mapview hg19]  
OMIM605488   
Gene and transcription
Genbank (Entrez)AF112220 AK055064 AK091377 AK093648 AK289649
RefSeq transcript (Entrez)NM_001025068 NM_001025069 NM_001267616 NM_001267617 NM_001267618 NM_001267619 NM_001385484 NM_001385485 NM_001385486 NM_001385487 NM_001385488 NM_001385489 NM_001385490 NM_001385491 NM_001385492 NM_001385495 NM_001385496 NM_001385497 NM_001385517 NM_001385536 NM_001385556 NM_001385558 NM_001385562 NM_001385563 NM_001385564 NM_001385565 NM_001385566 NM_001385567 NM_001385573 NM_001385574 NM_001385576 NM_001385577 NM_001385578 NM_001385580 NM_001385581 NM_001385582 NM_001385584 NM_001385585 NM_001385587 NM_001385588 NM_001385589 NM_001385590 NM_001385591 NM_001385592 NM_001385593 NM_001385594 NM_001385595 NM_016300 NM_198399
Consensus coding sequences : CCDS (NCBI)ARPP21
Gene ExpressionARPP21 [ NCBI-GEO ]   ARPP21 [ EBI - ARRAY_EXPRESS ]   ARPP21 [ SEEK ]   ARPP21 [ MEM ]
Gene Expression Viewer (FireBrowse)ARPP21 [ Firebrowse - Broad ]
GenevisibleExpression of ARPP21 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)10777
GTEX Portal (Tissue expression)ARPP21
Human Protein AtlasENSG00000172995-ARPP21 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UBL0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UBL0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UBL0
PhosPhoSitePlusQ9UBL0
Domaine pattern : Prosite (Expaxy)R3H (PS51061)    SUZ (PS51673)   
Domains : Interpro (EBI)R3H_dom    R3H_dom_sf    SUZ   
Domain families : Pfam (Sanger)R3H (PF01424)    SUZ (PF12752)   
Domain families : Pfam (NCBI)pfam01424    pfam12752   
Domain families : Smart (EMBL)R3H (SM00393)  
Conserved Domain (NCBI)ARPP21
SuperfamilyQ9UBL0
AlphaFold pdb e-kbQ9UBL0   
Human Protein Atlas [tissue]ENSG00000172995-ARPP21 [tissue]
HPRD09265
Protein Interaction databases
DIP (DOE-UCLA)Q9UBL0
IntAct (EBI)Q9UBL0
BioGRIDARPP21
STRING (EMBL)ARPP21
ZODIACARPP21
Ontologies - Pathways
QuickGOQ9UBL0
Ontology : AmiGOmolecular_function  nucleic acid binding  calmodulin binding  cellular_component  cytoplasm  biological_process  
Ontology : EGO-EBImolecular_function  nucleic acid binding  calmodulin binding  cellular_component  cytoplasm  biological_process  
NDEx NetworkARPP21
Atlas of Cancer Signalling NetworkARPP21
Wikipedia pathwaysARPP21
Orthology - Evolution
OrthoDB10777
GeneTree (enSembl)ENSG00000172995
Phylogenetic Trees/Animal Genes : TreeFamARPP21
Homologs : HomoloGeneARPP21
Homology/Alignments : Family Browser (UCSC)ARPP21
Gene fusions - Rearrangements
Fusion : QuiverARPP21
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARPP21 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARPP21
dbVarARPP21
ClinVarARPP21
MonarchARPP21
1000_GenomesARPP21 
Exome Variant ServerARPP21
GNOMAD BrowserENSG00000172995
Varsome BrowserARPP21
ACMGARPP21 variants
VarityQ9UBL0
Genomic Variants (DGV)ARPP21 [DGVbeta]
DECIPHERARPP21 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARPP21 
Mutations
ICGC Data PortalARPP21 
TCGA Data PortalARPP21 
Broad Tumor PortalARPP21
OASIS PortalARPP21 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARPP21  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARPP21
Mutations and Diseases : HGMDARPP21
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARPP21
DgiDB (Drug Gene Interaction Database)ARPP21
DoCM (Curated mutations)ARPP21
CIViC (Clinical Interpretations of Variants in Cancer)ARPP21
Cancer3DARPP21
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605488   
Orphanet
DisGeNETARPP21
MedgenARPP21
Genetic Testing Registry ARPP21
NextProtQ9UBL0 [Medical]
GENETestsARPP21
Target ValidationARPP21
Huge Navigator ARPP21 [HugePedia]
ClinGenARPP21
Clinical trials, drugs, therapy
MyCancerGenomeARPP21
Protein Interactions : CTDARPP21
Pharm GKB GenePA166048949
PharosQ9UBL0
Clinical trialARPP21
Miscellaneous
canSAR (ICR)ARPP21
HarmonizomeARPP21
DataMed IndexARPP21
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARPP21
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:42:39 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.