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ARRDC1-AS1 (ARRDC1 antisense RNA 1)

Identity

Alias_namesC9orf37
chromosome 9 open reading frame 37
Other alias
HGNC (Hugo) ARRDC1-AS1
LocusID (NCBI) 85026
Atlas_Id 60527
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 137615332 and ends at 137618813 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ARRDC1-AS1 (9q34.3) / ARRDC1-AS1 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARRDC1-AS1   23395
Cards
Entrez_Gene (NCBI)ARRDC1-AS1  85026  ARRDC1 antisense RNA 1
AliasesC9orf37
GeneCards (Weizmann)ARRDC1-AS1
Ensembl hg19 (Hinxton)ENSG00000203993 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000203993 [Gene_View]  chr9:137615332-137618813 [Contig_View]  ARRDC1-AS1 [Vega]
ICGC DataPortalENSG00000203993
TCGA cBioPortalARRDC1-AS1
AceView (NCBI)ARRDC1-AS1
Genatlas (Paris)ARRDC1-AS1
WikiGenes85026
SOURCE (Princeton)ARRDC1-AS1
Genetics Home Reference (NIH)ARRDC1-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ARRDC1-AS1  -     chr9:137615332-137618813 -  9q34.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARRDC1-AS1  -     9q34.3   [Description]    (hg19-Feb_2009)
EnsemblARRDC1-AS1 - 9q34.3 [CytoView hg19]  ARRDC1-AS1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIARRDC1-AS1 [Mapview hg19]  ARRDC1-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF267857 AL516492 AW015916 BC011781 BC066646
RefSeq transcript (Entrez)NM_032937
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARRDC1-AS1
Cluster EST : UnigeneHs.522520 [ NCBI ]
CGAP (NCI)Hs.522520
Alternative Splicing GalleryENSG00000203993
Gene ExpressionARRDC1-AS1 [ NCBI-GEO ]   ARRDC1-AS1 [ EBI - ARRAY_EXPRESS ]   ARRDC1-AS1 [ SEEK ]   ARRDC1-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARRDC1-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)85026
GTEX Portal (Tissue expression)ARRDC1-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2J1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2J1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2J1
Splice isoforms : SwissVarQ9H2J1
PhosPhoSitePlusQ9H2J1
Domains : Interpro (EBI)Gasdermin   
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ARRDC1-AS1
DMDM Disease mutations85026
Blocks (Seattle)ARRDC1-AS1
SuperfamilyQ9H2J1
Human Protein AtlasENSG00000203993
Peptide AtlasQ9H2J1
HPRD12955
IPIIPI00607774   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2J1
IntAct (EBI)Q9H2J1
FunCoupENSG00000203993
BioGRIDARRDC1-AS1
STRING (EMBL)ARRDC1-AS1
ZODIACARRDC1-AS1
Ontologies - Pathways
QuickGOQ9H2J1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkARRDC1-AS1
Atlas of Cancer Signalling NetworkARRDC1-AS1
Wikipedia pathwaysARRDC1-AS1
Orthology - Evolution
OrthoDB85026
GeneTree (enSembl)ENSG00000203993
Phylogenetic Trees/Animal Genes : TreeFamARRDC1-AS1
HOVERGENQ9H2J1
HOGENOMQ9H2J1
Homologs : HomoloGeneARRDC1-AS1
Homology/Alignments : Family Browser (UCSC)ARRDC1-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARRDC1-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARRDC1-AS1
dbVarARRDC1-AS1
ClinVarARRDC1-AS1
1000_GenomesARRDC1-AS1 
Exome Variant ServerARRDC1-AS1
ExAC (Exome Aggregation Consortium)ARRDC1-AS1 (select the gene name)
Genetic variants : HAPMAP85026
Genomic Variants (DGV)ARRDC1-AS1 [DGVbeta]
DECIPHERARRDC1-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARRDC1-AS1 
Mutations
ICGC Data PortalARRDC1-AS1 
TCGA Data PortalARRDC1-AS1 
Broad Tumor PortalARRDC1-AS1
OASIS PortalARRDC1-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDARRDC1-AS1
BioMutasearch ARRDC1-AS1
DgiDB (Drug Gene Interaction Database)ARRDC1-AS1
DoCM (Curated mutations)ARRDC1-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARRDC1-AS1 (select a term)
intoGenARRDC1-AS1
Cancer3DARRDC1-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARRDC1-AS1
Genetic Testing Registry ARRDC1-AS1
NextProtQ9H2J1 [Medical]
TSGene85026
GENETestsARRDC1-AS1
Target ValidationARRDC1-AS1
Huge Navigator ARRDC1-AS1 [HugePedia]
snp3D : Map Gene to Disease85026
BioCentury BCIQARRDC1-AS1
ClinGenARRDC1-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD85026
Chemical/Pharm GKB GenePA134985448
Clinical trialARRDC1-AS1
Miscellaneous
canSAR (ICR)ARRDC1-AS1 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARRDC1-AS1
EVEXARRDC1-AS1
GoPubMedARRDC1-AS1
iHOPARRDC1-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:52 CEST 2017

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