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ARRDC1 (arrestin domain containing 1)

Identity

Alias_symbol (synonym)MGC40555
Other alias-
HGNC (Hugo) ARRDC1
LocusID (NCBI) 92714
Atlas_Id 60526
Location 9q34.3  [Link to chromosome band 9q34]
Location_base_pair Starts at 140500096 and ends at 140509812 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ARRDC1 (9q34.3) / ARRDC1 (9q34.3)ARRDC1 (9q34.3) / CTNNA1 (5q31.2)ARRDC1 (9q34.3) / GLB1L2 (11q25)
ZMYND19 (9q34.3) / ARRDC1 (9q34.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARRDC1   28633
Cards
Entrez_Gene (NCBI)ARRDC1  92714  arrestin domain containing 1
Aliases
GeneCards (Weizmann)ARRDC1
Ensembl hg19 (Hinxton)ENSG00000197070 [Gene_View]  chr9:140500096-140509812 [Contig_View]  ARRDC1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000197070 [Gene_View]  chr9:140500096-140509812 [Contig_View]  ARRDC1 [Vega]
ICGC DataPortalENSG00000197070
TCGA cBioPortalARRDC1
AceView (NCBI)ARRDC1
Genatlas (Paris)ARRDC1
WikiGenes92714
SOURCE (Princeton)ARRDC1
Genetics Home Reference (NIH)ARRDC1
Genomic and cartography
GoldenPath hg19 (UCSC)ARRDC1  -     chr9:140500096-140509812 +  9q34.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARRDC1  -     9q34.3   [Description]    (hg38-Dec_2013)
EnsemblARRDC1 - 9q34.3 [CytoView hg19]  ARRDC1 - 9q34.3 [CytoView hg38]
Mapping of homologs : NCBIARRDC1 [Mapview hg19]  ARRDC1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA552336 AB209523 AJ420420 AK001822 AK308376
RefSeq transcript (Entrez)NM_152285
RefSeq genomic (Entrez)NC_000009 NC_018920 NT_008470 NW_004929369
Consensus coding sequences : CCDS (NCBI)ARRDC1
Cluster EST : UnigeneHs.12999 [ NCBI ]
CGAP (NCI)Hs.12999
Alternative Splicing GalleryENSG00000197070
Gene ExpressionARRDC1 [ NCBI-GEO ]   ARRDC1 [ EBI - ARRAY_EXPRESS ]   ARRDC1 [ SEEK ]   ARRDC1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARRDC1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92714
GTEX Portal (Tissue expression)ARRDC1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8N5I2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8N5I2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8N5I2
Splice isoforms : SwissVarQ8N5I2
PhosPhoSitePlusQ8N5I2
Domains : Interpro (EBI)Arrestin-like_N    Arrestin_C-like    Ig_E-set   
Domain families : Pfam (Sanger)Arrestin_C (PF02752)    Arrestin_N (PF00339)   
Domain families : Pfam (NCBI)pfam02752    pfam00339   
Domain families : Smart (EMBL)Arrestin_C (SM01017)  
Conserved Domain (NCBI)ARRDC1
DMDM Disease mutations92714
Blocks (Seattle)ARRDC1
SuperfamilyQ8N5I2
Human Protein AtlasENSG00000197070
Peptide AtlasQ8N5I2
HPRD12491
IPIIPI00166858   IPI00555847   IPI00981075   IPI00514937   IPI00514720   
Protein Interaction databases
DIP (DOE-UCLA)Q8N5I2
IntAct (EBI)Q8N5I2
FunCoupENSG00000197070
BioGRIDARRDC1
STRING (EMBL)ARRDC1
ZODIACARRDC1
Ontologies - Pathways
QuickGOQ8N5I2
Ontology : AmiGOplasma membrane  cytoplasmic vesicle  extracellular exosome  
Ontology : EGO-EBIplasma membrane  cytoplasmic vesicle  extracellular exosome  
NDEx NetworkARRDC1
Atlas of Cancer Signalling NetworkARRDC1
Wikipedia pathwaysARRDC1
Orthology - Evolution
OrthoDB92714
GeneTree (enSembl)ENSG00000197070
Phylogenetic Trees/Animal Genes : TreeFamARRDC1
HOVERGENQ8N5I2
HOGENOMQ8N5I2
Homologs : HomoloGeneARRDC1
Homology/Alignments : Family Browser (UCSC)ARRDC1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARRDC1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARRDC1
dbVarARRDC1
ClinVarARRDC1
1000_GenomesARRDC1 
Exome Variant ServerARRDC1
ExAC (Exome Aggregation Consortium)ARRDC1 (select the gene name)
Genetic variants : HAPMAP92714
Genomic Variants (DGV)ARRDC1 [DGVbeta]
DECIPHER (Syndromes)9:140500096-140509812  ENSG00000197070
CONAN: Copy Number AnalysisARRDC1 
Mutations
ICGC Data PortalARRDC1 
TCGA Data PortalARRDC1 
Broad Tumor PortalARRDC1
OASIS PortalARRDC1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARRDC1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARRDC1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARRDC1
DgiDB (Drug Gene Interaction Database)ARRDC1
DoCM (Curated mutations)ARRDC1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARRDC1 (select a term)
intoGenARRDC1
Cancer3DARRDC1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARRDC1
Genetic Testing Registry ARRDC1
NextProtQ8N5I2 [Medical]
TSGene92714
GENETestsARRDC1
Huge Navigator ARRDC1 [HugePedia]
snp3D : Map Gene to Disease92714
BioCentury BCIQARRDC1
ClinGenARRDC1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92714
Chemical/Pharm GKB GenePA134938267
Clinical trialARRDC1
Miscellaneous
canSAR (ICR)ARRDC1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARRDC1
EVEXARRDC1
GoPubMedARRDC1
iHOPARRDC1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Mar 14 11:55:03 CET 2017

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