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ARRDC2 (arrestin domain containing 2)

Identity

Alias_symbol (synonym)CLONE24945
PP2703
Other alias
HGNC (Hugo) ARRDC2
LocusID (NCBI) 27106
Atlas_Id 60528
Location 19p13.11  [Link to chromosome band 19p13]
Location_base_pair Starts at 18001132 and ends at 18014102 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARRDC2 (19p13.11) / FBXO32 (8q24.13)ARRDC2 (19p13.11) / KCNN1 (19p13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARRDC2   25225
Cards
Entrez_Gene (NCBI)ARRDC2  27106  arrestin domain containing 2
AliasesCLONE24945; PP2703
GeneCards (Weizmann)ARRDC2
Ensembl hg19 (Hinxton)ENSG00000105643 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105643 [Gene_View]  chr19:18001132-18014102 [Contig_View]  ARRDC2 [Vega]
ICGC DataPortalENSG00000105643
TCGA cBioPortalARRDC2
AceView (NCBI)ARRDC2
Genatlas (Paris)ARRDC2
WikiGenes27106
SOURCE (Princeton)ARRDC2
Genetics Home Reference (NIH)ARRDC2
Genomic and cartography
GoldenPath hg38 (UCSC)ARRDC2  -     chr19:18001132-18014102 +  19p13.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARRDC2  -     19p13.11   [Description]    (hg19-Feb_2009)
EnsemblARRDC2 - 19p13.11 [CytoView hg19]  ARRDC2 - 19p13.11 [CytoView hg38]
Mapping of homologs : NCBIARRDC2 [Mapview hg19]  ARRDC2 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF131826 AF193051 AI420040 AK000689 AK127940
RefSeq transcript (Entrez)NM_001025604 NM_001286826 NM_015683
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARRDC2
Cluster EST : UnigeneHs.515249 [ NCBI ]
CGAP (NCI)Hs.515249
Alternative Splicing GalleryENSG00000105643
Gene ExpressionARRDC2 [ NCBI-GEO ]   ARRDC2 [ EBI - ARRAY_EXPRESS ]   ARRDC2 [ SEEK ]   ARRDC2 [ MEM ]
Gene Expression Viewer (FireBrowse)ARRDC2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)27106
GTEX Portal (Tissue expression)ARRDC2
Human Protein AtlasENSG00000105643-ARRDC2 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TBH0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TBH0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TBH0
Splice isoforms : SwissVarQ8TBH0
PhosPhoSitePlusQ8TBH0
Domains : Interpro (EBI)Arrestin-like_N    Arrestin_C    Arrestin_C-like    Ig_E-set   
Domain families : Pfam (Sanger)Arrestin_C (PF02752)    Arrestin_N (PF00339)   
Domain families : Pfam (NCBI)pfam02752    pfam00339   
Domain families : Smart (EMBL)Arrestin_C (SM01017)  
Conserved Domain (NCBI)ARRDC2
DMDM Disease mutations27106
Blocks (Seattle)ARRDC2
SuperfamilyQ8TBH0
Human Protein Atlas [tissue]ENSG00000105643-ARRDC2 [tissue]
Peptide AtlasQ8TBH0
HPRD12492
IPIIPI00328155   IPI00619906   
Protein Interaction databases
DIP (DOE-UCLA)Q8TBH0
IntAct (EBI)Q8TBH0
FunCoupENSG00000105643
BioGRIDARRDC2
STRING (EMBL)ARRDC2
ZODIACARRDC2
Ontologies - Pathways
QuickGOQ8TBH0
Ontology : AmiGOplasma membrane  cytoplasmic vesicle  
Ontology : EGO-EBIplasma membrane  cytoplasmic vesicle  
NDEx NetworkARRDC2
Atlas of Cancer Signalling NetworkARRDC2
Wikipedia pathwaysARRDC2
Orthology - Evolution
OrthoDB27106
GeneTree (enSembl)ENSG00000105643
Phylogenetic Trees/Animal Genes : TreeFamARRDC2
HOVERGENQ8TBH0
HOGENOMQ8TBH0
Homologs : HomoloGeneARRDC2
Homology/Alignments : Family Browser (UCSC)ARRDC2
Gene fusions - Rearrangements
Tumor Fusion PortalARRDC2
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARRDC2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARRDC2
dbVarARRDC2
ClinVarARRDC2
1000_GenomesARRDC2 
Exome Variant ServerARRDC2
ExAC (Exome Aggregation Consortium)ENSG00000105643
GNOMAD BrowserENSG00000105643
Genetic variants : HAPMAP27106
Genomic Variants (DGV)ARRDC2 [DGVbeta]
DECIPHERARRDC2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARRDC2 
Mutations
ICGC Data PortalARRDC2 
TCGA Data PortalARRDC2 
Broad Tumor PortalARRDC2
OASIS PortalARRDC2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARRDC2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARRDC2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARRDC2
DgiDB (Drug Gene Interaction Database)ARRDC2
DoCM (Curated mutations)ARRDC2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARRDC2 (select a term)
intoGenARRDC2
Cancer3DARRDC2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
DisGeNETARRDC2
MedgenARRDC2
Genetic Testing Registry ARRDC2
NextProtQ8TBH0 [Medical]
TSGene27106
GENETestsARRDC2
Target ValidationARRDC2
Huge Navigator ARRDC2 [HugePedia]
snp3D : Map Gene to Disease27106
BioCentury BCIQARRDC2
ClinGenARRDC2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD27106
Chemical/Pharm GKB GenePA134945141
Clinical trialARRDC2
Miscellaneous
canSAR (ICR)ARRDC2 (select the gene name)
Probes
Litterature
PubMed8 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARRDC2
EVEXARRDC2
GoPubMedARRDC2
iHOPARRDC2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

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indexed on : Tue Nov 21 13:38:08 CET 2017

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