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ARRDC3 (arrestin domain containing 3)

Identity

Alias_symbol (synonym)KIAA1376
TLIMP
Other alias
HGNC (Hugo) ARRDC3
LocusID (NCBI) 57561
Atlas_Id 51690
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 90664541 and ends at 90679149 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ACSL4 (Xq23) / ARRDC3 (5q14.3)ARRDC3 (5q14.3) / ACSL4 (Xq23)ARRDC3 (5q14.3) / ARRDC3 (5q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARRDC3   29263
Cards
Entrez_Gene (NCBI)ARRDC3  57561  arrestin domain containing 3
AliasesTLIMP
GeneCards (Weizmann)ARRDC3
Ensembl hg19 (Hinxton)ENSG00000113369 [Gene_View]  chr5:90664541-90679149 [Contig_View]  ARRDC3 [Vega]
Ensembl hg38 (Hinxton)ENSG00000113369 [Gene_View]  chr5:90664541-90679149 [Contig_View]  ARRDC3 [Vega]
ICGC DataPortalENSG00000113369
TCGA cBioPortalARRDC3
AceView (NCBI)ARRDC3
Genatlas (Paris)ARRDC3
WikiGenes57561
SOURCE (Princeton)ARRDC3
Genetics Home Reference (NIH)ARRDC3
Genomic and cartography
GoldenPath hg19 (UCSC)ARRDC3  -     chr5:90664541-90679149 -  5q14.3   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARRDC3  -     5q14.3   [Description]    (hg38-Dec_2013)
EnsemblARRDC3 - 5q14.3 [CytoView hg19]  ARRDC3 - 5q14.3 [CytoView hg38]
Mapping of homologs : NCBIARRDC3 [Mapview hg19]  ARRDC3 [Mapview hg38]
OMIM612464   
Gene and transcription
Genbank (Entrez)AB037797 AK025028 AK026917 AK291753 BC015928
RefSeq transcript (Entrez)NM_020801
RefSeq genomic (Entrez)NC_000005 NC_018916 NT_034772 NW_004929322
Consensus coding sequences : CCDS (NCBI)ARRDC3
Cluster EST : UnigeneHs.24684 [ NCBI ]
CGAP (NCI)Hs.24684
Alternative Splicing GalleryENSG00000113369
Gene ExpressionARRDC3 [ NCBI-GEO ]   ARRDC3 [ EBI - ARRAY_EXPRESS ]   ARRDC3 [ SEEK ]   ARRDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ARRDC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57561
GTEX Portal (Tissue expression)ARRDC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B67
Splice isoforms : SwissVarQ96B67
PhosPhoSitePlusQ96B67
Domains : Interpro (EBI)Arrestin-like_N    Arrestin_C-like    Ig_E-set   
Domain families : Pfam (Sanger)Arrestin_C (PF02752)    Arrestin_N (PF00339)   
Domain families : Pfam (NCBI)pfam02752    pfam00339   
Domain families : Smart (EMBL)Arrestin_C (SM01017)  
Conserved Domain (NCBI)ARRDC3
DMDM Disease mutations57561
Blocks (Seattle)ARRDC3
PDB (SRS)4N7H    4R7V    4R7X   
PDB (PDBSum)4N7H    4R7V    4R7X   
PDB (IMB)4N7H    4R7V    4R7X   
PDB (RSDB)4N7H    4R7V    4R7X   
Structural Biology KnowledgeBase4N7H    4R7V    4R7X   
SCOP (Structural Classification of Proteins)4N7H    4R7V    4R7X   
CATH (Classification of proteins structures)4N7H    4R7V    4R7X   
SuperfamilyQ96B67
Human Protein AtlasENSG00000113369
Peptide AtlasQ96B67
HPRD09810
IPIIPI00002205   
Protein Interaction databases
DIP (DOE-UCLA)Q96B67
IntAct (EBI)Q96B67
FunCoupENSG00000113369
BioGRIDARRDC3
STRING (EMBL)ARRDC3
ZODIACARRDC3
Ontologies - Pathways
QuickGOQ96B67
Ontology : AmiGOtemperature homeostasis  protein binding  lysosome  endosome  early endosome  plasma membrane  negative regulation of heat generation  beta-3 adrenergic receptor binding  skin development  negative regulation of multicellular organismal metabolic process  positive regulation of ubiquitin-protein transferase activity  fat pad development  positive regulation of adrenergic receptor signaling pathway  negative regulation of locomotion involved in locomotory behavior  
Ontology : EGO-EBItemperature homeostasis  protein binding  lysosome  endosome  early endosome  plasma membrane  negative regulation of heat generation  beta-3 adrenergic receptor binding  skin development  negative regulation of multicellular organismal metabolic process  positive regulation of ubiquitin-protein transferase activity  fat pad development  positive regulation of adrenergic receptor signaling pathway  negative regulation of locomotion involved in locomotory behavior  
NDEx NetworkARRDC3
Atlas of Cancer Signalling NetworkARRDC3
Wikipedia pathwaysARRDC3
Orthology - Evolution
OrthoDB57561
GeneTree (enSembl)ENSG00000113369
Phylogenetic Trees/Animal Genes : TreeFamARRDC3
HOVERGENQ96B67
HOGENOMQ96B67
Homologs : HomoloGeneARRDC3
Homology/Alignments : Family Browser (UCSC)ARRDC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARRDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARRDC3
dbVarARRDC3
ClinVarARRDC3
1000_GenomesARRDC3 
Exome Variant ServerARRDC3
ExAC (Exome Aggregation Consortium)ARRDC3 (select the gene name)
Genetic variants : HAPMAP57561
Genomic Variants (DGV)ARRDC3 [DGVbeta]
DECIPHER (Syndromes)5:90664541-90679149  ENSG00000113369
CONAN: Copy Number AnalysisARRDC3 
Mutations
ICGC Data PortalARRDC3 
TCGA Data PortalARRDC3 
Broad Tumor PortalARRDC3
OASIS PortalARRDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARRDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARRDC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARRDC3
DgiDB (Drug Gene Interaction Database)ARRDC3
DoCM (Curated mutations)ARRDC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARRDC3 (select a term)
intoGenARRDC3
Cancer3DARRDC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612464   
Orphanet
MedgenARRDC3
Genetic Testing Registry ARRDC3
NextProtQ96B67 [Medical]
TSGene57561
GENETestsARRDC3
Huge Navigator ARRDC3 [HugePedia]
snp3D : Map Gene to Disease57561
BioCentury BCIQARRDC3
ClinGenARRDC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD57561
Chemical/Pharm GKB GenePA134925765
Clinical trialARRDC3
Miscellaneous
canSAR (ICR)ARRDC3 (select the gene name)
Probes
Litterature
PubMed22 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARRDC3
EVEXARRDC3
GoPubMedARRDC3
iHOPARRDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 12:56:38 CET 2017

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