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ARRDC3 (arrestin domain containing 3)

Identity

Alias (NCBI)TLIMP
HGNC (Hugo) ARRDC3
HGNC Alias symbKIAA1376
TLIMP
HGNC Alias namealpha-arrestin 3
 TBP-2-like inducible membrane protein
LocusID (NCBI) 57561
Atlas_Id 51690
Location 5q14.3  [Link to chromosome band 5q14]
Location_base_pair Starts at 91368631 and ends at 91383317 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ACSL4 (Xq23) / ARRDC3 (5q14.3)ARRDC3 (5q14.3) / ACSL4 (Xq23)ARRDC3 (5q14.3) / ARRDC3 (5q14.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ARRDC3   29263
Cards
Entrez_Gene (NCBI)ARRDC3    arrestin domain containing 3
AliasesTLIMP
GeneCards (Weizmann)ARRDC3
Ensembl hg19 (Hinxton)ENSG00000113369 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000113369 [Gene_View]  ENSG00000113369 [Sequence]  chr5:91368631-91383317 [Contig_View]  ARRDC3 [Vega]
ICGC DataPortalENSG00000113369
TCGA cBioPortalARRDC3
AceView (NCBI)ARRDC3
Genatlas (Paris)ARRDC3
SOURCE (Princeton)ARRDC3
Genetics Home Reference (NIH)ARRDC3
Genomic and cartography
GoldenPath hg38 (UCSC)ARRDC3  -     chr5:91368631-91383317 -  5q14.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARRDC3  -     5q14.3   [Description]    (hg19-Feb_2009)
GoldenPathARRDC3 - 5q14.3 [CytoView hg19]  ARRDC3 - 5q14.3 [CytoView hg38]
ImmunoBaseENSG00000113369
Genome Data Viewer NCBIARRDC3 [Mapview hg19]  
OMIM612464   
Gene and transcription
Genbank (Entrez)AB037797 AK025028 AK026917 AK291753 BC015928
RefSeq transcript (Entrez)NM_001329670 NM_001329671 NM_001329672 NM_020801
Consensus coding sequences : CCDS (NCBI)ARRDC3
Gene ExpressionARRDC3 [ NCBI-GEO ]   ARRDC3 [ EBI - ARRAY_EXPRESS ]   ARRDC3 [ SEEK ]   ARRDC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ARRDC3 [ Firebrowse - Broad ]
GenevisibleExpression of ARRDC3 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)57561
GTEX Portal (Tissue expression)ARRDC3
Human Protein AtlasENSG00000113369-ARRDC3 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96B67   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96B67  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96B67
PhosPhoSitePlusQ96B67
Domains : Interpro (EBI)Arrestin-like_N    Arrestin_C    Arrestin_C-like    Ig_E-set   
Domain families : Pfam (Sanger)Arrestin_C (PF02752)    Arrestin_N (PF00339)   
Domain families : Pfam (NCBI)pfam02752    pfam00339   
Domain families : Smart (EMBL)Arrestin_C (SM01017)  
Conserved Domain (NCBI)ARRDC3
PDB (RSDB)4N7H    4R7V    4R7X   
PDB Europe4N7H    4R7V    4R7X   
PDB (PDBSum)4N7H    4R7V    4R7X   
PDB (IMB)4N7H    4R7V    4R7X   
Structural Biology KnowledgeBase4N7H    4R7V    4R7X   
SCOP (Structural Classification of Proteins)4N7H    4R7V    4R7X   
CATH (Classification of proteins structures)4N7H    4R7V    4R7X   
SuperfamilyQ96B67
AlphaFold pdb e-kbQ96B67   
Human Protein Atlas [tissue]ENSG00000113369-ARRDC3 [tissue]
HPRD09810
Protein Interaction databases
DIP (DOE-UCLA)Q96B67
IntAct (EBI)Q96B67
BioGRIDARRDC3
STRING (EMBL)ARRDC3
ZODIACARRDC3
Ontologies - Pathways
QuickGOQ96B67
Ontology : AmiGOtemperature homeostasis  protein binding  cytoplasm  lysosome  endosome  endosome  early endosome  plasma membrane  plasma membrane  protein transport  negative regulation of heat generation  beta-3 adrenergic receptor binding  skin development  positive regulation of ubiquitin-protein transferase activity  fat pad development  negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of locomotion involved in locomotory behavior  negative regulation of cold-induced thermogenesis  
Ontology : EGO-EBItemperature homeostasis  protein binding  cytoplasm  lysosome  endosome  endosome  early endosome  plasma membrane  plasma membrane  protein transport  negative regulation of heat generation  beta-3 adrenergic receptor binding  skin development  positive regulation of ubiquitin-protein transferase activity  fat pad development  negative regulation of adenylate cyclase-activating adrenergic receptor signaling pathway  negative regulation of locomotion involved in locomotory behavior  negative regulation of cold-induced thermogenesis  
NDEx NetworkARRDC3
Atlas of Cancer Signalling NetworkARRDC3
Wikipedia pathwaysARRDC3
Orthology - Evolution
OrthoDB57561
GeneTree (enSembl)ENSG00000113369
Phylogenetic Trees/Animal Genes : TreeFamARRDC3
Homologs : HomoloGeneARRDC3
Homology/Alignments : Family Browser (UCSC)ARRDC3
Gene fusions - Rearrangements
Fusion : QuiverARRDC3
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARRDC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARRDC3
dbVarARRDC3
ClinVarARRDC3
MonarchARRDC3
1000_GenomesARRDC3 
Exome Variant ServerARRDC3
GNOMAD BrowserENSG00000113369
Varsome BrowserARRDC3
ACMGARRDC3 variants
VarityQ96B67
Genomic Variants (DGV)ARRDC3 [DGVbeta]
DECIPHERARRDC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARRDC3 
Mutations
ICGC Data PortalARRDC3 
TCGA Data PortalARRDC3 
Broad Tumor PortalARRDC3
OASIS PortalARRDC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARRDC3  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DARRDC3
Mutations and Diseases : HGMDARRDC3
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaARRDC3
DgiDB (Drug Gene Interaction Database)ARRDC3
DoCM (Curated mutations)ARRDC3
CIViC (Clinical Interpretations of Variants in Cancer)ARRDC3
Cancer3DARRDC3
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM612464   
Orphanet
DisGeNETARRDC3
MedgenARRDC3
Genetic Testing Registry ARRDC3
NextProtQ96B67 [Medical]
GENETestsARRDC3
Target ValidationARRDC3
Huge Navigator ARRDC3 [HugePedia]
ClinGenARRDC3
Clinical trials, drugs, therapy
MyCancerGenomeARRDC3
Protein Interactions : CTDARRDC3
Pharm GKB GenePA134925765
PharosQ96B67
Clinical trialARRDC3
Miscellaneous
canSAR (ICR)ARRDC3
HarmonizomeARRDC3
DataMed IndexARRDC3
Probes
Litterature
PubMed37 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXARRDC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Oct 4 15:00:13 CEST 2021

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