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ARRDC4 (arrestin domain containing 4)

Identity

Alias_symbol (synonym)FLJ36045
Other alias-
HGNC (Hugo) ARRDC4
LocusID (NCBI) 91947
Atlas_Id 60530
Location 15q26.2  [Link to chromosome band 15q26]
Location_base_pair Starts at 97960703 and ends at 97973838 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARRDC4   28087
Cards
Entrez_Gene (NCBI)ARRDC4  91947  arrestin domain containing 4
Aliases
GeneCards (Weizmann)ARRDC4
Ensembl hg19 (Hinxton)ENSG00000140450 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000140450 [Gene_View]  chr15:97960703-97973838 [Contig_View]  ARRDC4 [Vega]
ICGC DataPortalENSG00000140450
TCGA cBioPortalARRDC4
AceView (NCBI)ARRDC4
Genatlas (Paris)ARRDC4
WikiGenes91947
SOURCE (Princeton)ARRDC4
Genetics Home Reference (NIH)ARRDC4
Genomic and cartography
GoldenPath hg38 (UCSC)ARRDC4  -     chr15:97960703-97973838 +  15q26.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARRDC4  -     15q26.2   [Description]    (hg19-Feb_2009)
EnsemblARRDC4 - 15q26.2 [CytoView hg19]  ARRDC4 - 15q26.2 [CytoView hg38]
Mapping of homologs : NCBIARRDC4 [Mapview hg19]  ARRDC4 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AA872967 AK026436 AK093364 AK290221 AK296448
RefSeq transcript (Entrez)NM_183376
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARRDC4
Cluster EST : UnigeneHs.6093 [ NCBI ]
CGAP (NCI)Hs.6093
Alternative Splicing GalleryENSG00000140450
Gene ExpressionARRDC4 [ NCBI-GEO ]   ARRDC4 [ EBI - ARRAY_EXPRESS ]   ARRDC4 [ SEEK ]   ARRDC4 [ MEM ]
Gene Expression Viewer (FireBrowse)ARRDC4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)91947
GTEX Portal (Tissue expression)ARRDC4
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8NCT1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8NCT1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8NCT1
Splice isoforms : SwissVarQ8NCT1
PhosPhoSitePlusQ8NCT1
Domains : Interpro (EBI)Arrestin-like_N    Arrestin_C-like    Ig_E-set   
Domain families : Pfam (Sanger)Arrestin_C (PF02752)    Arrestin_N (PF00339)   
Domain families : Pfam (NCBI)pfam02752    pfam00339   
Domain families : Smart (EMBL)Arrestin_C (SM01017)  
Conserved Domain (NCBI)ARRDC4
DMDM Disease mutations91947
Blocks (Seattle)ARRDC4
SuperfamilyQ8NCT1
Human Protein AtlasENSG00000140450
Peptide AtlasQ8NCT1
HPRD10664
IPIIPI00339213   IPI01010842   
Protein Interaction databases
DIP (DOE-UCLA)Q8NCT1
IntAct (EBI)Q8NCT1
FunCoupENSG00000140450
BioGRIDARRDC4
STRING (EMBL)ARRDC4
ZODIACARRDC4
Ontologies - Pathways
QuickGOQ8NCT1
Ontology : AmiGOprotein binding  endosome  early endosome  plasma membrane  positive regulation of ubiquitin-protein transferase activity  
Ontology : EGO-EBIprotein binding  endosome  early endosome  plasma membrane  positive regulation of ubiquitin-protein transferase activity  
NDEx NetworkARRDC4
Atlas of Cancer Signalling NetworkARRDC4
Wikipedia pathwaysARRDC4
Orthology - Evolution
OrthoDB91947
GeneTree (enSembl)ENSG00000140450
Phylogenetic Trees/Animal Genes : TreeFamARRDC4
HOVERGENQ8NCT1
HOGENOMQ8NCT1
Homologs : HomoloGeneARRDC4
Homology/Alignments : Family Browser (UCSC)ARRDC4
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARRDC4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARRDC4
dbVarARRDC4
ClinVarARRDC4
1000_GenomesARRDC4 
Exome Variant ServerARRDC4
ExAC (Exome Aggregation Consortium)ARRDC4 (select the gene name)
Genetic variants : HAPMAP91947
Genomic Variants (DGV)ARRDC4 [DGVbeta]
DECIPHERARRDC4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARRDC4 
Mutations
ICGC Data PortalARRDC4 
TCGA Data PortalARRDC4 
Broad Tumor PortalARRDC4
OASIS PortalARRDC4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARRDC4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARRDC4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARRDC4
DgiDB (Drug Gene Interaction Database)ARRDC4
DoCM (Curated mutations)ARRDC4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARRDC4 (select a term)
intoGenARRDC4
Cancer3DARRDC4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARRDC4
Genetic Testing Registry ARRDC4
NextProtQ8NCT1 [Medical]
TSGene91947
GENETestsARRDC4
Target ValidationARRDC4
Huge Navigator ARRDC4 [HugePedia]
snp3D : Map Gene to Disease91947
BioCentury BCIQARRDC4
ClinGenARRDC4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD91947
Chemical/Pharm GKB GenePA134895338
Clinical trialARRDC4
Miscellaneous
canSAR (ICR)ARRDC4 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARRDC4
EVEXARRDC4
GoPubMedARRDC4
iHOPARRDC4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:52 CEST 2017

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