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ARRDC5 (arrestin domain containing 5)

Identity

Other alias-
HGNC (Hugo) ARRDC5
LocusID (NCBI) 645432
Atlas_Id 60531
Location 19p13.3  [Link to chromosome band 19p13]
Location_base_pair Starts at 4890437 and ends at 4902867 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
PLIN3 (19p13.3) / ARRDC5 (19p13.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARRDC5   31407
Cards
Entrez_Gene (NCBI)ARRDC5  645432  arrestin domain containing 5
Aliases
GeneCards (Weizmann)ARRDC5
Ensembl hg19 (Hinxton)ENSG00000205784 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205784 [Gene_View]  chr19:4890437-4902867 [Contig_View]  ARRDC5 [Vega]
ICGC DataPortalENSG00000205784
TCGA cBioPortalARRDC5
AceView (NCBI)ARRDC5
Genatlas (Paris)ARRDC5
WikiGenes645432
SOURCE (Princeton)ARRDC5
Genetics Home Reference (NIH)ARRDC5
Genomic and cartography
GoldenPath hg38 (UCSC)ARRDC5  -     chr19:4890437-4902867 -  19p13.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARRDC5  -     19p13.3   [Description]    (hg19-Feb_2009)
EnsemblARRDC5 - 19p13.3 [CytoView hg19]  ARRDC5 - 19p13.3 [CytoView hg38]
Mapping of homologs : NCBIARRDC5 [Mapview hg19]  ARRDC5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK097879
RefSeq transcript (Entrez)NM_001080523
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARRDC5
Cluster EST : UnigeneHs.660674 [ NCBI ]
CGAP (NCI)Hs.660674
Alternative Splicing GalleryENSG00000205784
Gene ExpressionARRDC5 [ NCBI-GEO ]   ARRDC5 [ EBI - ARRAY_EXPRESS ]   ARRDC5 [ SEEK ]   ARRDC5 [ MEM ]
Gene Expression Viewer (FireBrowse)ARRDC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)645432
GTEX Portal (Tissue expression)ARRDC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtA6NEK1   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtA6NEK1  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProA6NEK1
Splice isoforms : SwissVarA6NEK1
PhosPhoSitePlusA6NEK1
Domains : Interpro (EBI)Arrestin-like_N    Arrestin_C    Arrestin_C-like    Ig_E-set   
Domain families : Pfam (Sanger)Arrestin_C (PF02752)    Arrestin_N (PF00339)   
Domain families : Pfam (NCBI)pfam02752    pfam00339   
Domain families : Smart (EMBL)Arrestin_C (SM01017)  
Conserved Domain (NCBI)ARRDC5
DMDM Disease mutations645432
Blocks (Seattle)ARRDC5
SuperfamilyA6NEK1
Human Protein AtlasENSG00000205784
Peptide AtlasA6NEK1
IPIIPI00643956   
Protein Interaction databases
DIP (DOE-UCLA)A6NEK1
IntAct (EBI)A6NEK1
FunCoupENSG00000205784
BioGRIDARRDC5
STRING (EMBL)ARRDC5
ZODIACARRDC5
Ontologies - Pathways
QuickGOA6NEK1
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkARRDC5
Atlas of Cancer Signalling NetworkARRDC5
Wikipedia pathwaysARRDC5
Orthology - Evolution
OrthoDB645432
GeneTree (enSembl)ENSG00000205784
Phylogenetic Trees/Animal Genes : TreeFamARRDC5
HOVERGENA6NEK1
HOGENOMA6NEK1
Homologs : HomoloGeneARRDC5
Homology/Alignments : Family Browser (UCSC)ARRDC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARRDC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARRDC5
dbVarARRDC5
ClinVarARRDC5
1000_GenomesARRDC5 
Exome Variant ServerARRDC5
ExAC (Exome Aggregation Consortium)ARRDC5 (select the gene name)
Genetic variants : HAPMAP645432
Genomic Variants (DGV)ARRDC5 [DGVbeta]
DECIPHERARRDC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARRDC5 
Mutations
ICGC Data PortalARRDC5 
TCGA Data PortalARRDC5 
Broad Tumor PortalARRDC5
OASIS PortalARRDC5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARRDC5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARRDC5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARRDC5
DgiDB (Drug Gene Interaction Database)ARRDC5
DoCM (Curated mutations)ARRDC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARRDC5 (select a term)
intoGenARRDC5
Cancer3DARRDC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenARRDC5
Genetic Testing Registry ARRDC5
NextProtA6NEK1 [Medical]
TSGene645432
GENETestsARRDC5
Target ValidationARRDC5
Huge Navigator ARRDC5 [HugePedia]
snp3D : Map Gene to Disease645432
BioCentury BCIQARRDC5
ClinGenARRDC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD645432
Chemical/Pharm GKB GenePA134917663
Clinical trialARRDC5
Miscellaneous
canSAR (ICR)ARRDC5 (select the gene name)
Probes
Litterature
PubMed3 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARRDC5
EVEXARRDC5
GoPubMedARRDC5
iHOPARRDC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:53 CEST 2017

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