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ARSD (arylsulfatase D)

Identity

Other aliasASD
HGNC (Hugo) ARSD
LocusID (NCBI) 414
Atlas_Id 46720
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 2913614 and ends at 2929375 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ARSD (Xp22.33) / ARSD (Xp22.33)ARSD (Xp22.33) / SLC25A33 (1p36.22)DPH5 (1p21.2) / ARSD (Xp22.33)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARSD   717
Cards
Entrez_Gene (NCBI)ARSD  414  arylsulfatase D
AliasesASD
GeneCards (Weizmann)ARSD
Ensembl hg19 (Hinxton)ENSG00000006756 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000006756 [Gene_View]  ENSG00000006756 [Sequence]  chrX:2913614-2929375 [Contig_View]  ARSD [Vega]
ICGC DataPortalENSG00000006756
TCGA cBioPortalARSD
AceView (NCBI)ARSD
Genatlas (Paris)ARSD
WikiGenes414
SOURCE (Princeton)ARSD
Genetics Home Reference (NIH)ARSD
Genomic and cartography
GoldenPath hg38 (UCSC)ARSD  -     chrX:2913614-2929375 -  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARSD  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblARSD - Xp22.33 [CytoView hg19]  ARSD - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIARSD [Mapview hg19]  ARSD [Mapview hg38]
OMIM300002   
Gene and transcription
Genbank (Entrez)AF160499 AI289224 AK021472 AK055239 AK314479
RefSeq transcript (Entrez)NM_001669 NM_009589
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARSD
Cluster EST : UnigeneHs.528631 [ NCBI ]
CGAP (NCI)Hs.528631
Alternative Splicing GalleryENSG00000006756
Gene ExpressionARSD [ NCBI-GEO ]   ARSD [ EBI - ARRAY_EXPRESS ]   ARSD [ SEEK ]   ARSD [ MEM ]
Gene Expression Viewer (FireBrowse)ARSD [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)414
GTEX Portal (Tissue expression)ARSD
Human Protein AtlasENSG00000006756-ARSD [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP51689   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP51689  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP51689
Splice isoforms : SwissVarP51689
Catalytic activity : Enzyme3.1.6.- [ Enzyme-Expasy ]   3.1.6.-3.1.6.- [ IntEnz-EBI ]   3.1.6.- [ BRENDA ]   3.1.6.- [ KEGG ]   
PhosPhoSitePlusP51689
Domaine pattern : Prosite (Expaxy)SULFATASE_1 (PS00523)    SULFATASE_2 (PS00149)   
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a    Alkaline_phosphatase_core_sf    Sulfatase_CS    Sulfatase_N   
Domain families : Pfam (Sanger)Sulfatase (PF00884)   
Domain families : Pfam (NCBI)pfam00884   
Conserved Domain (NCBI)ARSD
DMDM Disease mutations414
Blocks (Seattle)ARSD
SuperfamilyP51689
Human Protein Atlas [tissue]ENSG00000006756-ARSD [tissue]
Peptide AtlasP51689
HPRD02048
IPIIPI00019989   IPI00028695   IPI00914575   IPI00640789   IPI01008845   
Protein Interaction databases
DIP (DOE-UCLA)P51689
IntAct (EBI)P51689
FunCoupENSG00000006756
BioGRIDARSD
STRING (EMBL)ARSD
ZODIACARSD
Ontologies - Pathways
QuickGOP51689
Ontology : AmiGOarylsulfatase activity  lysosome  endoplasmic reticulum lumen  metal ion binding  
Ontology : EGO-EBIarylsulfatase activity  lysosome  endoplasmic reticulum lumen  metal ion binding  
NDEx NetworkARSD
Atlas of Cancer Signalling NetworkARSD
Wikipedia pathwaysARSD
Orthology - Evolution
OrthoDB414
GeneTree (enSembl)ENSG00000006756
Phylogenetic Trees/Animal Genes : TreeFamARSD
HOVERGENP51689
HOGENOMP51689
Homologs : HomoloGeneARSD
Homology/Alignments : Family Browser (UCSC)ARSD
Gene fusions - Rearrangements
Fusion : QuiverARSD
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARSD [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARSD
dbVarARSD
ClinVarARSD
1000_GenomesARSD 
Exome Variant ServerARSD
ExAC (Exome Aggregation Consortium)ENSG00000006756
GNOMAD BrowserENSG00000006756
Varsome BrowserARSD
Genetic variants : HAPMAP414
Genomic Variants (DGV)ARSD [DGVbeta]
DECIPHERARSD [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARSD 
Mutations
ICGC Data PortalARSD 
TCGA Data PortalARSD 
Broad Tumor PortalARSD
OASIS PortalARSD [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARSD  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARSD
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ARSD
DgiDB (Drug Gene Interaction Database)ARSD
DoCM (Curated mutations)ARSD (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARSD (select a term)
intoGenARSD
Cancer3DARSD(select the gene name)
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300002   
Orphanet
DisGeNETARSD
MedgenARSD
Genetic Testing Registry ARSD
NextProtP51689 [Medical]
TSGene414
GENETestsARSD
Target ValidationARSD
Huge Navigator ARSD [HugePedia]
snp3D : Map Gene to Disease414
BioCentury BCIQARSD
ClinGenARSD (curated)
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD414
Chemical/Pharm GKB GenePA25008
Clinical trialARSD
Miscellaneous
canSAR (ICR)ARSD (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARSD
EVEXARSD
GoPubMedARSD
iHOPARSD
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 6 10:52:31 CET 2018

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