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ARSF (arylsulfatase F)

Identity

Other aliasASF
HGNC (Hugo) ARSF
LocusID (NCBI) 416
Atlas_Id 60534
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 3040234 and ends at 3112729 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARSF   721
Cards
Entrez_Gene (NCBI)ARSF  416  arylsulfatase F
AliasesASF
GeneCards (Weizmann)ARSF
Ensembl hg19 (Hinxton)ENSG00000062096 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000062096 [Gene_View]  chrX:3040234-3112729 [Contig_View]  ARSF [Vega]
ICGC DataPortalENSG00000062096
TCGA cBioPortalARSF
AceView (NCBI)ARSF
Genatlas (Paris)ARSF
WikiGenes416
SOURCE (Princeton)ARSF
Genetics Home Reference (NIH)ARSF
Genomic and cartography
GoldenPath hg38 (UCSC)ARSF  -     chrX:3040234-3112729 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARSF  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblARSF - Xp22.33 [CytoView hg19]  ARSF - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIARSF [Mapview hg19]  ARSF [Mapview hg38]
OMIM300003   
Gene and transcription
Genbank (Entrez)BC022389 BP274206 BP277542 BQ228278 BX107362
RefSeq transcript (Entrez)NM_001201538 NM_001201539 NM_004042
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARSF
Cluster EST : UnigeneHs.101674 [ NCBI ]
CGAP (NCI)Hs.101674
Alternative Splicing GalleryENSG00000062096
Gene ExpressionARSF [ NCBI-GEO ]   ARSF [ EBI - ARRAY_EXPRESS ]   ARSF [ SEEK ]   ARSF [ MEM ]
Gene Expression Viewer (FireBrowse)ARSF [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)416
GTEX Portal (Tissue expression)ARSF
Protein : pattern, domain, 3D structure
UniProt/SwissProtP54793   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP54793  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP54793
Splice isoforms : SwissVarP54793
Catalytic activity : Enzyme3.1.6.- [ Enzyme-Expasy ]   3.1.6.-3.1.6.- [ IntEnz-EBI ]   3.1.6.- [ BRENDA ]   3.1.6.- [ KEGG ]   
PhosPhoSitePlusP54793
Domaine pattern : Prosite (Expaxy)SULFATASE_1 (PS00523)    SULFATASE_2 (PS00149)   
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a    Alkaline_phosphatase_core    Sulfatase_CS    Sulfatase_N   
Domain families : Pfam (Sanger)Sulfatase (PF00884)   
Domain families : Pfam (NCBI)pfam00884   
Conserved Domain (NCBI)ARSF
DMDM Disease mutations416
Blocks (Seattle)ARSF
SuperfamilyP54793
Human Protein AtlasENSG00000062096
Peptide AtlasP54793
HPRD02049
IPIIPI00008405   
Protein Interaction databases
DIP (DOE-UCLA)P54793
IntAct (EBI)P54793
FunCoupENSG00000062096
BioGRIDARSF
STRING (EMBL)ARSF
ZODIACARSF
Ontologies - Pathways
QuickGOP54793
Ontology : AmiGOarylsulfatase activity  endoplasmic reticulum lumen  glycosphingolipid metabolic process  post-translational protein modification  metal ion binding  extracellular exosome  
Ontology : EGO-EBIarylsulfatase activity  endoplasmic reticulum lumen  glycosphingolipid metabolic process  post-translational protein modification  metal ion binding  extracellular exosome  
NDEx NetworkARSF
Atlas of Cancer Signalling NetworkARSF
Wikipedia pathwaysARSF
Orthology - Evolution
OrthoDB416
GeneTree (enSembl)ENSG00000062096
Phylogenetic Trees/Animal Genes : TreeFamARSF
HOVERGENP54793
HOGENOMP54793
Homologs : HomoloGeneARSF
Homology/Alignments : Family Browser (UCSC)ARSF
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARSF [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARSF
dbVarARSF
ClinVarARSF
1000_GenomesARSF 
Exome Variant ServerARSF
ExAC (Exome Aggregation Consortium)ARSF (select the gene name)
Genetic variants : HAPMAP416
Genomic Variants (DGV)ARSF [DGVbeta]
DECIPHERARSF [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARSF 
Mutations
ICGC Data PortalARSF 
TCGA Data PortalARSF 
Broad Tumor PortalARSF
OASIS PortalARSF [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARSF  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARSF
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ARSF
DgiDB (Drug Gene Interaction Database)ARSF
DoCM (Curated mutations)ARSF (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARSF (select a term)
intoGenARSF
Cancer3DARSF(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300003   
Orphanet
MedgenARSF
Genetic Testing Registry ARSF
NextProtP54793 [Medical]
TSGene416
GENETestsARSF
Target ValidationARSF
Huge Navigator ARSF [HugePedia]
snp3D : Map Gene to Disease416
BioCentury BCIQARSF
ClinGenARSF
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD416
Chemical/Pharm GKB GenePA25012
Clinical trialARSF
Miscellaneous
canSAR (ICR)ARSF (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARSF
EVEXARSF
GoPubMedARSF
iHOPARSF
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:53 CEST 2017

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