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ARSH (arylsulfatase family member H)

Identity

Alias_namesarylsulfatase H
arylsulfatase family, member H
Other aliassulfatase
HGNC (Hugo) ARSH
LocusID (NCBI) 347527
Atlas_Id 60536
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 3006613 and ends at 3033385 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARSH   32488
Cards
Entrez_Gene (NCBI)ARSH  347527  arylsulfatase family member H
Aliasessulfatase
GeneCards (Weizmann)ARSH
Ensembl hg19 (Hinxton)ENSG00000205667 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000205667 [Gene_View]  chrX:3006613-3033385 [Contig_View]  ARSH [Vega]
ICGC DataPortalENSG00000205667
TCGA cBioPortalARSH
AceView (NCBI)ARSH
Genatlas (Paris)ARSH
WikiGenes347527
SOURCE (Princeton)ARSH
Genetics Home Reference (NIH)ARSH
Genomic and cartography
GoldenPath hg38 (UCSC)ARSH  -     chrX:3006613-3033385 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARSH  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblARSH - Xp22.33 [CytoView hg19]  ARSH - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIARSH [Mapview hg19]  ARSH [Mapview hg38]
OMIM300586   
Gene and transcription
Genbank (Entrez)AY875940 BC148492 BC153085
RefSeq transcript (Entrez)NM_001011719
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARSH
Cluster EST : UnigeneHs.351533 [ NCBI ]
CGAP (NCI)Hs.351533
Alternative Splicing GalleryENSG00000205667
Gene ExpressionARSH [ NCBI-GEO ]   ARSH [ EBI - ARRAY_EXPRESS ]   ARSH [ SEEK ]   ARSH [ MEM ]
Gene Expression Viewer (FireBrowse)ARSH [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)347527
GTEX Portal (Tissue expression)ARSH
Human Protein AtlasENSG00000205667-ARSH [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5FYA8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5FYA8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5FYA8
Splice isoforms : SwissVarQ5FYA8
PhosPhoSitePlusQ5FYA8
Domaine pattern : Prosite (Expaxy)SULFATASE_1 (PS00523)    SULFATASE_2 (PS00149)   
Domains : Interpro (EBI)Alkaline_Pase-like_a/b/a    Alkaline_phosphatase_core    Sulfatase_CS    Sulfatase_N   
Domain families : Pfam (Sanger)Sulfatase (PF00884)   
Domain families : Pfam (NCBI)pfam00884   
Conserved Domain (NCBI)ARSH
DMDM Disease mutations347527
Blocks (Seattle)ARSH
SuperfamilyQ5FYA8
Human Protein Atlas [tissue]ENSG00000205667-ARSH [tissue]
Peptide AtlasQ5FYA8
HPRD16509
IPIIPI00233062   
Protein Interaction databases
DIP (DOE-UCLA)Q5FYA8
IntAct (EBI)Q5FYA8
FunCoupENSG00000205667
BioGRIDARSH
STRING (EMBL)ARSH
ZODIACARSH
Ontologies - Pathways
QuickGOQ5FYA8
Ontology : AmiGOarylsulfatase activity  endoplasmic reticulum lumen  glycosphingolipid metabolic process  integral component of membrane  post-translational protein modification  metal ion binding  
Ontology : EGO-EBIarylsulfatase activity  endoplasmic reticulum lumen  glycosphingolipid metabolic process  integral component of membrane  post-translational protein modification  metal ion binding  
NDEx NetworkARSH
Atlas of Cancer Signalling NetworkARSH
Wikipedia pathwaysARSH
Orthology - Evolution
OrthoDB347527
GeneTree (enSembl)ENSG00000205667
Phylogenetic Trees/Animal Genes : TreeFamARSH
HOVERGENQ5FYA8
HOGENOMQ5FYA8
Homologs : HomoloGeneARSH
Homology/Alignments : Family Browser (UCSC)ARSH
Gene fusions - Rearrangements
Tumor Fusion PortalARSH
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARSH [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARSH
dbVarARSH
ClinVarARSH
1000_GenomesARSH 
Exome Variant ServerARSH
ExAC (Exome Aggregation Consortium)ENSG00000205667
GNOMAD BrowserENSG00000205667
Genetic variants : HAPMAP347527
Genomic Variants (DGV)ARSH [DGVbeta]
DECIPHERARSH [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARSH 
Mutations
ICGC Data PortalARSH 
TCGA Data PortalARSH 
Broad Tumor PortalARSH
OASIS PortalARSH [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARSH  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARSH
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARSH
DgiDB (Drug Gene Interaction Database)ARSH
DoCM (Curated mutations)ARSH (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARSH (select a term)
intoGenARSH
Cancer3DARSH(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300586   
Orphanet
DisGeNETARSH
MedgenARSH
Genetic Testing Registry ARSH
NextProtQ5FYA8 [Medical]
TSGene347527
GENETestsARSH
Target ValidationARSH
Huge Navigator ARSH [HugePedia]
snp3D : Map Gene to Disease347527
BioCentury BCIQARSH
ClinGenARSH
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD347527
Chemical/Pharm GKB GenePA143485308
Clinical trialARSH
Miscellaneous
canSAR (ICR)ARSH (select the gene name)
Probes
Litterature
PubMed1 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARSH
EVEXARSH
GoPubMedARSH
iHOPARSH
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:59:14 CET 2017

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