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ART1 (ADP-ribosyltransferase 1)

Identity

Alias_symbol (synonym)ART2
CD296
Other aliasARTC1
RT6
HGNC (Hugo) ART1
LocusID (NCBI) 417
Atlas_Id 49747
Location 11p15.4  [Link to chromosome band 11p15]
Location_base_pair Starts at 3645131 and ends at 3664416 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
DDX5 (17q23.3) / ART1 (11p15.4)DDX5 17q23.3 / ART1 11p15.4

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ART1   723
Cards
Entrez_Gene (NCBI)ART1  417  ADP-ribosyltransferase 1
AliasesART2; ARTC1; CD296; RT6
GeneCards (Weizmann)ART1
Ensembl hg19 (Hinxton)ENSG00000129744 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000129744 [Gene_View]  chr11:3645131-3664416 [Contig_View]  ART1 [Vega]
ICGC DataPortalENSG00000129744
TCGA cBioPortalART1
AceView (NCBI)ART1
Genatlas (Paris)ART1
WikiGenes417
SOURCE (Princeton)ART1
Genetics Home Reference (NIH)ART1
Genomic and cartography
GoldenPath hg38 (UCSC)ART1  -     chr11:3645131-3664416 +  11p15.4   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ART1  -     11p15.4   [Description]    (hg19-Feb_2009)
EnsemblART1 - 11p15.4 [CytoView hg19]  ART1 - 11p15.4 [CytoView hg38]
Mapping of homologs : NCBIART1 [Mapview hg19]  ART1 [Mapview hg38]
OMIM601625   
Gene and transcription
Genbank (Entrez)AJ291430 BC017828 BC069102 BC069828 BC111729
RefSeq transcript (Entrez)NM_004314
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ART1
Cluster EST : UnigeneHs.382188 [ NCBI ]
CGAP (NCI)Hs.382188
Alternative Splicing GalleryENSG00000129744
Gene ExpressionART1 [ NCBI-GEO ]   ART1 [ EBI - ARRAY_EXPRESS ]   ART1 [ SEEK ]   ART1 [ MEM ]
Gene Expression Viewer (FireBrowse)ART1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)417
GTEX Portal (Tissue expression)ART1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP52961   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP52961  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP52961
Splice isoforms : SwissVarP52961
Catalytic activity : Enzyme2.4.2.31 [ Enzyme-Expasy ]   2.4.2.312.4.2.31 [ IntEnz-EBI ]   2.4.2.31 [ BRENDA ]   2.4.2.31 [ KEGG ]   
PhosPhoSitePlusP52961
Domaine pattern : Prosite (Expaxy)ART (PS01291)   
Domains : Interpro (EBI)ART   
Domain families : Pfam (Sanger)ART (PF01129)   
Domain families : Pfam (NCBI)pfam01129   
Conserved Domain (NCBI)ART1
DMDM Disease mutations417
Blocks (Seattle)ART1
SuperfamilyP52961
Human Protein AtlasENSG00000129744
Peptide AtlasP52961
HPRD03377
IPIIPI00006067   
Protein Interaction databases
DIP (DOE-UCLA)P52961
IntAct (EBI)P52961
FunCoupENSG00000129744
BioGRIDART1
STRING (EMBL)ART1
ZODIACART1
Ontologies - Pathways
QuickGOP52961
Ontology : AmiGONAD+ ADP-ribosyltransferase activity  NAD(P)+-protein-arginine ADP-ribosyltransferase activity  plasma membrane  integral component of plasma membrane  protein ADP-ribosylation  cell surface  sarcoplasmic reticulum  anchored component of membrane  sarcoplasmic reticulum membrane  
Ontology : EGO-EBINAD+ ADP-ribosyltransferase activity  NAD(P)+-protein-arginine ADP-ribosyltransferase activity  plasma membrane  integral component of plasma membrane  protein ADP-ribosylation  cell surface  sarcoplasmic reticulum  anchored component of membrane  sarcoplasmic reticulum membrane  
NDEx NetworkART1
Atlas of Cancer Signalling NetworkART1
Wikipedia pathwaysART1
Orthology - Evolution
OrthoDB417
GeneTree (enSembl)ENSG00000129744
Phylogenetic Trees/Animal Genes : TreeFamART1
HOVERGENP52961
HOGENOMP52961
Homologs : HomoloGeneART1
Homology/Alignments : Family Browser (UCSC)ART1
Gene fusions - Rearrangements
Fusion : MitelmanDDX5/ART1 [17q23.3/11p15.4]  [t(11;17)(p15;q23)]  
Fusion: TCGADDX5 17q23.3 ART1 11p15.4 BRCA
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerART1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ART1
dbVarART1
ClinVarART1
1000_GenomesART1 
Exome Variant ServerART1
ExAC (Exome Aggregation Consortium)ART1 (select the gene name)
Genetic variants : HAPMAP417
Genomic Variants (DGV)ART1 [DGVbeta]
DECIPHERART1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisART1 
Mutations
ICGC Data PortalART1 
TCGA Data PortalART1 
Broad Tumor PortalART1
OASIS PortalART1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICART1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDART1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ART1
DgiDB (Drug Gene Interaction Database)ART1
DoCM (Curated mutations)ART1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ART1 (select a term)
intoGenART1
Cancer3DART1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM601625   
Orphanet
MedgenART1
Genetic Testing Registry ART1
NextProtP52961 [Medical]
TSGene417
GENETestsART1
Huge Navigator ART1 [HugePedia]
snp3D : Map Gene to Disease417
BioCentury BCIQART1
ClinGenART1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD417
Chemical/Pharm GKB GenePA25014
Clinical trialART1
Miscellaneous
canSAR (ICR)ART1 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineART1
EVEXART1
GoPubMedART1
iHOPART1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:50 CEST 2017

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