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ARTN (artemin)

Identity

Alias_symbol (synonym)NBN
EVN
ENOVIN
Other alias
HGNC (Hugo) ARTN
LocusID (NCBI) 9048
Atlas_Id 50955
Location 1p34.1  [Link to chromosome band 1p34]
Location_base_pair Starts at 44398992 and ends at 44402912 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARTN   727
Cards
Entrez_Gene (NCBI)ARTN  9048  artemin
AliasesENOVIN; EVN; NBN
GeneCards (Weizmann)ARTN
Ensembl hg19 (Hinxton)ENSG00000117407 [Gene_View]  chr1:44398992-44402912 [Contig_View]  ARTN [Vega]
Ensembl hg38 (Hinxton)ENSG00000117407 [Gene_View]  chr1:44398992-44402912 [Contig_View]  ARTN [Vega]
ICGC DataPortalENSG00000117407
TCGA cBioPortalARTN
AceView (NCBI)ARTN
Genatlas (Paris)ARTN
WikiGenes9048
SOURCE (Princeton)ARTN
Genetics Home Reference (NIH)ARTN
Genomic and cartography
GoldenPath hg19 (UCSC)ARTN  -     chr1:44398992-44402912 +  1p34.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARTN  -     1p34.1   [Description]    (hg38-Dec_2013)
EnsemblARTN - 1p34.1 [CytoView hg19]  ARTN - 1p34.1 [CytoView hg38]
Mapping of homologs : NCBIARTN [Mapview hg19]  ARTN [Mapview hg38]
OMIM603886   
Gene and transcription
Genbank (Entrez)AF109401 AF120274 BC062375
RefSeq transcript (Entrez)NM_001136215 NM_003976 NM_057090 NM_057091 NM_057160
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ARTN
Cluster EST : UnigeneHs.632404 [ NCBI ]
CGAP (NCI)Hs.632404
Alternative Splicing GalleryENSG00000117407
Gene ExpressionARTN [ NCBI-GEO ]   ARTN [ EBI - ARRAY_EXPRESS ]   ARTN [ SEEK ]   ARTN [ MEM ]
Gene Expression Viewer (FireBrowse)ARTN [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9048
GTEX Portal (Tissue expression)ARTN
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ5T4W7   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ5T4W7  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ5T4W7
Splice isoforms : SwissVarQ5T4W7
PhosPhoSitePlusQ5T4W7
Domaine pattern : Prosite (Expaxy)TGF_BETA_2 (PS51362)   
Domains : Interpro (EBI)Cystine-knot_cytokine    TGF-b_C   
Domain families : Pfam (Sanger)TGF_beta (PF00019)   
Domain families : Pfam (NCBI)pfam00019   
Domain families : Smart (EMBL)TGFB (SM00204)  
Conserved Domain (NCBI)ARTN
DMDM Disease mutations9048
Blocks (Seattle)ARTN
PDB (SRS)2ASK    2GH0    2GYR    2GYZ   
PDB (PDBSum)2ASK    2GH0    2GYR    2GYZ   
PDB (IMB)2ASK    2GH0    2GYR    2GYZ   
PDB (RSDB)2ASK    2GH0    2GYR    2GYZ   
Structural Biology KnowledgeBase2ASK    2GH0    2GYR    2GYZ   
SCOP (Structural Classification of Proteins)2ASK    2GH0    2GYR    2GYZ   
CATH (Classification of proteins structures)2ASK    2GH0    2GYR    2GYZ   
SuperfamilyQ5T4W7
Human Protein AtlasENSG00000117407
Peptide AtlasQ5T4W7
HPRD04863
IPIIPI00022605   IPI00030734   IPI00418466   IPI00984783   IPI00977337   IPI00983485   
Protein Interaction databases
DIP (DOE-UCLA)Q5T4W7
IntAct (EBI)Q5T4W7
FunCoupENSG00000117407
BioGRIDARTN
STRING (EMBL)ARTN
ZODIACARTN
Ontologies - Pathways
QuickGOQ5T4W7
Ontology : AmiGOMAPK cascade  Ras guanyl-nucleotide exchange factor activity  receptor binding  extracellular region  extracellular space  intracellular  signal transduction  neuroblast proliferation  axon guidance  peripheral nervous system development  growth factor activity  positive regulation of GTPase activity  induction of positive chemotaxis  Peyer's patch morphogenesis  lymphocyte migration into lymphoid organs  
Ontology : EGO-EBIMAPK cascade  Ras guanyl-nucleotide exchange factor activity  receptor binding  extracellular region  extracellular space  intracellular  signal transduction  neuroblast proliferation  axon guidance  peripheral nervous system development  growth factor activity  positive regulation of GTPase activity  induction of positive chemotaxis  Peyer's patch morphogenesis  lymphocyte migration into lymphoid organs  
NDEx NetworkARTN
Atlas of Cancer Signalling NetworkARTN
Wikipedia pathwaysARTN
Orthology - Evolution
OrthoDB9048
GeneTree (enSembl)ENSG00000117407
Phylogenetic Trees/Animal Genes : TreeFamARTN
HOVERGENQ5T4W7
HOGENOMQ5T4W7
Homologs : HomoloGeneARTN
Homology/Alignments : Family Browser (UCSC)ARTN
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARTN [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARTN
dbVarARTN
ClinVarARTN
1000_GenomesARTN 
Exome Variant ServerARTN
ExAC (Exome Aggregation Consortium)ARTN (select the gene name)
Genetic variants : HAPMAP9048
Genomic Variants (DGV)ARTN [DGVbeta]
DECIPHER (Syndromes)1:44398992-44402912  ENSG00000117407
CONAN: Copy Number AnalysisARTN 
Mutations
ICGC Data PortalARTN 
TCGA Data PortalARTN 
Broad Tumor PortalARTN
OASIS PortalARTN [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARTN  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARTN
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARTN
DgiDB (Drug Gene Interaction Database)ARTN
DoCM (Curated mutations)ARTN (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARTN (select a term)
intoGenARTN
Cancer3DARTN(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603886   
Orphanet
MedgenARTN
Genetic Testing Registry ARTN
NextProtQ5T4W7 [Medical]
TSGene9048
GENETestsARTN
Huge Navigator ARTN [HugePedia]
snp3D : Map Gene to Disease9048
BioCentury BCIQARTN
ClinGenARTN
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9048
Chemical/Pharm GKB GenePA25017
Clinical trialARTN
Miscellaneous
canSAR (ICR)ARTN (select the gene name)
Probes
Litterature
PubMed29 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARTN
EVEXARTN
GoPubMedARTN
iHOPARTN
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:09 CEST 2017

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