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ARV1 (ARV1 homolog (S. cerevisiae))

Identity

Alias_namesARV1 homolog (yeast)
ARV1 homolog (S. cerevisiae)
Other alias-
HGNC (Hugo) ARV1
LocusID (NCBI) 64801
Atlas_Id 60543
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 231114823 and ends at 231136479 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
CDK4 (12q14.1) / ARV1 (1q42.2)NEDD8-MDP1 (14q12) / ARV1 (1q42.2)PUM1 (1p35.2) / ARV1 (1q42.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARV1   29561
Cards
Entrez_Gene (NCBI)ARV1  64801  ARV1 homolog (S. cerevisiae)
Aliases
GeneCards (Weizmann)ARV1
Ensembl hg19 (Hinxton)ENSG00000173409 [Gene_View]  chr1:231114823-231136479 [Contig_View]  ARV1 [Vega]
Ensembl hg38 (Hinxton)ENSG00000173409 [Gene_View]  chr1:231114823-231136479 [Contig_View]  ARV1 [Vega]
ICGC DataPortalENSG00000173409
TCGA cBioPortalARV1
AceView (NCBI)ARV1
Genatlas (Paris)ARV1
WikiGenes64801
SOURCE (Princeton)ARV1
Genetics Home Reference (NIH)ARV1
Genomic and cartography
GoldenPath hg19 (UCSC)ARV1  -     chr1:231114823-231136479 +  1q42.2   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ARV1  -     1q42.2   [Description]    (hg38-Dec_2013)
EnsemblARV1 - 1q42.2 [CytoView hg19]  ARV1 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBIARV1 [Mapview hg19]  ARV1 [Mapview hg38]
OMIM611647   
Gene and transcription
Genbank (Entrez)AF271780 AF290878 AF321442 AK026629 AK293049
RefSeq transcript (Entrez)NM_022786
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_167186 NW_004929294
Consensus coding sequences : CCDS (NCBI)ARV1
Cluster EST : UnigeneHs.275736 [ NCBI ]
CGAP (NCI)Hs.275736
Alternative Splicing GalleryENSG00000173409
Gene ExpressionARV1 [ NCBI-GEO ]   ARV1 [ EBI - ARRAY_EXPRESS ]   ARV1 [ SEEK ]   ARV1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64801
GTEX Portal (Tissue expression)ARV1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2C2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2C2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2C2
Splice isoforms : SwissVarQ9H2C2
PhosPhoSitePlusQ9H2C2
Domains : Interpro (EBI)Arv1   
Domain families : Pfam (Sanger)Arv1 (PF04161)   
Domain families : Pfam (NCBI)pfam04161   
Conserved Domain (NCBI)ARV1
DMDM Disease mutations64801
Blocks (Seattle)ARV1
SuperfamilyQ9H2C2
Human Protein AtlasENSG00000173409
Peptide AtlasQ9H2C2
HPRD12494
IPIIPI00009725   IPI00980622   IPI00646828   IPI00479241   IPI01012944   IPI00647946   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2C2
IntAct (EBI)Q9H2C2
FunCoupENSG00000173409
BioGRIDARV1
STRING (EMBL)ARV1
ZODIACARV1
Ontologies - Pathways
QuickGOQ9H2C2
Ontology : AmiGOendoplasmic reticulum membrane  Golgi apparatus  sphingolipid metabolic process  cholesterol biosynthetic process  bile acid metabolic process  integral component of membrane  sterol metabolic process  cholesterol transport  intracellular sterol transport  cortical endoplasmic reticulum  small molecule metabolic process  regulation of cholesterol metabolic process  regulation of plasma membrane sterol distribution  
Ontology : EGO-EBIendoplasmic reticulum membrane  Golgi apparatus  sphingolipid metabolic process  cholesterol biosynthetic process  bile acid metabolic process  integral component of membrane  sterol metabolic process  cholesterol transport  intracellular sterol transport  cortical endoplasmic reticulum  small molecule metabolic process  regulation of cholesterol metabolic process  regulation of plasma membrane sterol distribution  
NDEx NetworkARV1
Atlas of Cancer Signalling NetworkARV1
Wikipedia pathwaysARV1
Orthology - Evolution
OrthoDB64801
GeneTree (enSembl)ENSG00000173409
Phylogenetic Trees/Animal Genes : TreeFamARV1
HOVERGENQ9H2C2
HOGENOMQ9H2C2
Homologs : HomoloGeneARV1
Homology/Alignments : Family Browser (UCSC)ARV1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARV1
dbVarARV1
ClinVarARV1
1000_GenomesARV1 
Exome Variant ServerARV1
ExAC (Exome Aggregation Consortium)ARV1 (select the gene name)
Genetic variants : HAPMAP64801
Genomic Variants (DGV)ARV1 [DGVbeta]
DECIPHER (Syndromes)1:231114823-231136479  ENSG00000173409
CONAN: Copy Number AnalysisARV1 
Mutations
ICGC Data PortalARV1 
TCGA Data PortalARV1 
Broad Tumor PortalARV1
OASIS PortalARV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARV1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARV1
DgiDB (Drug Gene Interaction Database)ARV1
DoCM (Curated mutations)ARV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARV1 (select a term)
intoGenARV1
Cancer3DARV1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611647   
Orphanet
MedgenARV1
Genetic Testing Registry ARV1
NextProtQ9H2C2 [Medical]
TSGene64801
GENETestsARV1
Huge Navigator ARV1 [HugePedia]
snp3D : Map Gene to Disease64801
BioCentury BCIQARV1
ClinGenARV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64801
Chemical/Pharm GKB GenePA134935092
Clinical trialARV1
Miscellaneous
canSAR (ICR)ARV1 (select the gene name)
Probes
Litterature
PubMed12 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARV1
EVEXARV1
GoPubMedARV1
iHOPARV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:06 CET 2017

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