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ARV1 (ARV1 homolog, fatty acid homeostasis modulator)

Identity

Alias_namesARV1 homolog (yeast)
ARV1 homolog (S. cerevisiae)
Other aliasEIEE38
HGNC (Hugo) ARV1
LocusID (NCBI) 64801
Atlas_Id 60543
Location 1q42.2  [Link to chromosome band 1q42]
Location_base_pair Starts at 230979049 and ends at 231000733 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
CDK4 (12q14.1) / ARV1 (1q42.2)NEDD8-MDP1 (14q12) / ARV1 (1q42.2)PUM1 (1p35.2) / ARV1 (1q42.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ARV1   29561
Cards
Entrez_Gene (NCBI)ARV1  64801  ARV1 homolog, fatty acid homeostasis modulator
AliasesEIEE38
GeneCards (Weizmann)ARV1
Ensembl hg19 (Hinxton)ENSG00000173409 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000173409 [Gene_View]  chr1:230979049-231000733 [Contig_View]  ARV1 [Vega]
ICGC DataPortalENSG00000173409
TCGA cBioPortalARV1
AceView (NCBI)ARV1
Genatlas (Paris)ARV1
WikiGenes64801
SOURCE (Princeton)ARV1
Genetics Home Reference (NIH)ARV1
Genomic and cartography
GoldenPath hg38 (UCSC)ARV1  -     chr1:230979049-231000733 +  1q42.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ARV1  -     1q42.2   [Description]    (hg19-Feb_2009)
EnsemblARV1 - 1q42.2 [CytoView hg19]  ARV1 - 1q42.2 [CytoView hg38]
Mapping of homologs : NCBIARV1 [Mapview hg19]  ARV1 [Mapview hg38]
OMIM611647   617020   
Gene and transcription
Genbank (Entrez)AF271780 AF290878 AF321442 AK026629 AK293049
RefSeq transcript (Entrez)NM_001346992 NM_022786
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ARV1
Cluster EST : UnigeneHs.275736 [ NCBI ]
CGAP (NCI)Hs.275736
Alternative Splicing GalleryENSG00000173409
Gene ExpressionARV1 [ NCBI-GEO ]   ARV1 [ EBI - ARRAY_EXPRESS ]   ARV1 [ SEEK ]   ARV1 [ MEM ]
Gene Expression Viewer (FireBrowse)ARV1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)64801
GTEX Portal (Tissue expression)ARV1
Human Protein AtlasENSG00000173409-ARV1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H2C2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H2C2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H2C2
Splice isoforms : SwissVarQ9H2C2
PhosPhoSitePlusQ9H2C2
Domains : Interpro (EBI)Arv1   
Domain families : Pfam (Sanger)Arv1 (PF04161)   
Domain families : Pfam (NCBI)pfam04161   
Conserved Domain (NCBI)ARV1
DMDM Disease mutations64801
Blocks (Seattle)ARV1
SuperfamilyQ9H2C2
Human Protein Atlas [tissue]ENSG00000173409-ARV1 [tissue]
Peptide AtlasQ9H2C2
HPRD12494
IPIIPI00009725   IPI00980622   IPI00646828   IPI00479241   IPI01012944   IPI00647946   
Protein Interaction databases
DIP (DOE-UCLA)Q9H2C2
IntAct (EBI)Q9H2C2
FunCoupENSG00000173409
BioGRIDARV1
STRING (EMBL)ARV1
ZODIACARV1
Ontologies - Pathways
QuickGOQ9H2C2
Ontology : AmiGOendoplasmic reticulum membrane  endoplasmic reticulum membrane  cholesterol biosynthetic process  bile acid metabolic process  sterol transporter activity  integral component of membrane  cholesterol transport  regulation of intracellular cholesterol transport  regulation of cholesterol metabolic process  
Ontology : EGO-EBIendoplasmic reticulum membrane  endoplasmic reticulum membrane  cholesterol biosynthetic process  bile acid metabolic process  sterol transporter activity  integral component of membrane  cholesterol transport  regulation of intracellular cholesterol transport  regulation of cholesterol metabolic process  
NDEx NetworkARV1
Atlas of Cancer Signalling NetworkARV1
Wikipedia pathwaysARV1
Orthology - Evolution
OrthoDB64801
GeneTree (enSembl)ENSG00000173409
Phylogenetic Trees/Animal Genes : TreeFamARV1
HOVERGENQ9H2C2
HOGENOMQ9H2C2
Homologs : HomoloGeneARV1
Homology/Alignments : Family Browser (UCSC)ARV1
Gene fusions - Rearrangements
Tumor Fusion PortalARV1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerARV1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ARV1
dbVarARV1
ClinVarARV1
1000_GenomesARV1 
Exome Variant ServerARV1
ExAC (Exome Aggregation Consortium)ENSG00000173409
GNOMAD BrowserENSG00000173409
Genetic variants : HAPMAP64801
Genomic Variants (DGV)ARV1 [DGVbeta]
DECIPHERARV1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisARV1 
Mutations
ICGC Data PortalARV1 
TCGA Data PortalARV1 
Broad Tumor PortalARV1
OASIS PortalARV1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICARV1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDARV1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ARV1
DgiDB (Drug Gene Interaction Database)ARV1
DoCM (Curated mutations)ARV1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ARV1 (select a term)
intoGenARV1
Cancer3DARV1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611647    617020   
Orphanet
DisGeNETARV1
MedgenARV1
Genetic Testing Registry ARV1
NextProtQ9H2C2 [Medical]
TSGene64801
GENETestsARV1
Target ValidationARV1
Huge Navigator ARV1 [HugePedia]
snp3D : Map Gene to Disease64801
BioCentury BCIQARV1
ClinGenARV1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD64801
Chemical/Pharm GKB GenePA134935092
Clinical trialARV1
Miscellaneous
canSAR (ICR)ARV1 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineARV1
EVEXARV1
GoPubMedARV1
iHOPARV1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 12:59:16 CET 2017

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