ARX (aristaless related homeobox)

Identity

Other names	ISSX
	MRX29
	MRX32
	MRX33
	MRX36
	MRX38
	MRX43
	MRX54
	MRX76
	MRX87
	MRXS1
	PRTS
HGNC	ARX
Location	Xp21.3
Location_base_pair	Starts at 24931732 and ends at 24943986 bp from pter (hg18-March_2006).
Note	Non-annotated gene. Preliminary data : if you are an author who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

External links

	Nomenclature
HGNC	ARX   18060
Entrez_Gene	ARX  170302  aristaless related homeobox
	Cards
GeneCards	ARX
Ensembl	ARX [Search_View]   ENSG00000004848 [Gene_View]
Genatlas	ARX
GeneLynx	ARX
eGenome	ARX
euGene	170302
	Genomic and cartography
GoldenPath	ARX  -  Xp21.3   chrX:24931732-24943986 -  Xp21.3   [Description]    (hg18-March_2006)
Ensembl	ARX - Xp21.3 [CytoView]
NCBI	Mapview
OMIM	Disease map [OMIM]
HomoloGene	ARX
	Gene and transcription
Genbank	AA484051 [ ENTREZ ]
Genbank	AY038071 [ ENTREZ ]
Genbank	BF196892 [ ENTREZ ]
Genbank	BQ100952 [ ENTREZ ]
Genbank	BQ269551 [ ENTREZ ]
RefSeq	NM_139058 [ SRS ]    NM_139058 [ ENTREZ ]
RefSeq	AC_000066 [ SRS ]    AC_000066 [ ENTREZ ]
RefSeq	NC_000023 [ SRS ]    NC_000023 [ ENTREZ ]
RefSeq	NG_008281 [ SRS ]    NG_008281 [ ENTREZ ]
RefSeq	NT_011757 [ SRS ]    NT_011757 [ ENTREZ ]
RefSeq	NW_927700 [ SRS ]    NW_927700 [ ENTREZ ]
AceView	ARX AceView - NCBI
Unigene	Hs.300304 [ SRS ]    Hs.300304 [ NCBI ]     HS300304 [ spliceNest ]
Fast-db	4649 (alternative variants)
	Protein : pattern, domain, 3D structure
SwissProt	Q96QS3 [ SRS]    Q96QS3 [ EXPASY ]     Q96QS3 [ INTERPRO ]     Q96QS3 [ UNIPROT ]
Prosite	PS00027 HOMEOBOX_1 [ SRS ]    PS00027 HOMEOBOX_1 [ Expasy ]
Prosite	PS50071 HOMEOBOX_2 [ SRS ]    PS50071 HOMEOBOX_2 [ Expasy ]
Prosite	PS50803 OAR [ SRS ]    PS50803 OAR [ Expasy ]
Interpro	IPR003654 Homeo_OAR [ SRS ]    IPR003654 Homeo_OAR [ EBI ]
Interpro	IPR001356 Homeobox [ SRS ]    IPR001356 Homeobox [ EBI ]
Interpro	IPR012287 Homeodomain-rel [ SRS ]    IPR012287 Homeodomain-rel [ EBI ]
Interpro	IPR000047 HTH_lambrepressr [ SRS ]    IPR000047 HTH_lambrepressr [ EBI ]
CluSTr	Q96QS3
Pfam	PF00046 Homeobox [ SRS ]    PF00046 Homeobox [ Sanger ]    pfam00046 [ NCBI-CDD ]
Pfam	PF03826 OAR [ SRS ]    PF03826 OAR [ Sanger ]    pfam03826 [ NCBI-CDD ]
Smart	SM00389 HOX [EMBL]
Prodom	PD000010 Homeobox[INRA-Toulouse]
Prodom	Q96QS3 ARX_HUMAN [ Domain structure ]   Q96QS3 ARX_HUMAN  [ sequences sharing at least 1 domain ]
Blocks	Q96QS3
HPRD	02307
	Protein Interaction databases
DIP	Q96QS3
IntAct	Q96QS3
	Polymorphism : SNP, mutations, diseases
OMIM	300004;300215;300382;300419;300432;308350;309510    [ map ]
GENECLINICS	300004;300215;300382;300419;300432;308350;309510
SNP	ARX [dbSNP-NCBI]
SNP	NM_139058 [SNP-NCI]
SNP	ARX [GeneSNPs - Utah]  ARX] [HGBASE - SRS]
HAPMAP	ARX [HAPMAP]
COSMIC	ARX [Somatic mutation (COSMIC-CGP-Sanger)]
HGMD	ARX
	General knowledge
Family Browser	ARX [UCSC Family Browser]
SOURCE	NM_139058
SMD	Hs.300304
SAGE	Hs.300304
GO	neuron migration [Amigo]  neuron migration
GO	transcription factor activity [Amigo]  transcription factor activity
GO	nucleus [Amigo]  nucleus
GO	regulation of transcription, DNA-dependent [Amigo]  regulation of transcription, DNA-dependent
GO	multicellular organismal development [Amigo]  multicellular organismal development
GO	nervous system development [Amigo]  nervous system development
GO	axon guidance [Amigo]  axon guidance
GO	globus pallidus development [Amigo]  globus pallidus development
GO	cerebral cortex tangential migration [Amigo]  cerebral cortex tangential migration
GO	cerebral cortex GABAergic interneuron migration [Amigo]  cerebral cortex GABAergic interneuron migration
GO	cell differentiation [Amigo]  cell differentiation
GO	forebrain development [Amigo]  forebrain development
GO	regulation of cell proliferation [Amigo]  regulation of cell proliferation
GO	sequence-specific DNA binding [Amigo]  sequence-specific DNA binding
PubGene	ARX
TreeFam	ARX
CTD	170302 [Comparative ToxicoGenomics Database]
	Other databases
	Probes
Probe	ARX Related clones (RZPD - Berlin)
	PubMed
PubMed	37 Pubmed reference(s) in Entrez

Genes in title	automatic search in PubMed
REVIEW articles	automatic search in PubMed
Last year publications	automatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written	09-2002	Dessen P, Le Minor S
Updated	03-2008	Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology

indexed on : Sat Oct 11 13:03:54 2008