Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ARX (aristaless related homeobox)

Identity

Other namesCT121
EIEE1
ISSX
MRX29
MRX32
MRX33
MRX36
MRX38
MRX43
MRX54
MRX76
MRX87
MRXS1
PRTS
HGNC (Hugo) ARX
LocusID (NCBI) 170302
Location Xp21.3
Location_base_pair Starts at 25021813 and ends at 25034065 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ARX   18060
Cards
Entrez_Gene (NCBI)ARX  170302  aristaless related homeobox
GeneCards (Weizmann)ARX
Ensembl (Hinxton)ENSG00000004848 [Gene_View]  chrX:25021813-25034065 [Contig_View]  ARX [Vega]
ICGC DataPortalENSG00000004848
cBioPortalARX
AceView (NCBI)ARX
Genatlas (Paris)ARX
WikiGenes170302
SOURCE (Princeton)NM_139058
Genomic and cartography
GoldenPath (UCSC)ARX  -  Xp21.3   chrX:25021813-25034065 -  Xp21.3   [Description]    (hg19-Feb_2009)
EnsemblARX - Xp21.3 [CytoView]
Mapping of homologs : NCBIARX [Mapview]
OMIM300004   300215   300382   300419   308350   309510   
Gene and transcription
Genbank (Entrez)AA484051 AY038071 BC169333 BC169334 BF196892
RefSeq transcript (Entrez)NM_139058
RefSeq genomic (Entrez)AC_000155 NC_000023 NC_018934 NG_008281 NT_167197 NW_001840957 NW_001842360 NW_004929438
Consensus coding sequences : CCDS (NCBI)ARX
Cluster EST : UnigeneHs.300304 [ NCBI ]
CGAP (NCI)Hs.300304
Alternative Splicing : Fast-db (Paris)GSHG0032021
Alternative Splicing GalleryENSG00000004848
Gene ExpressionARX [ NCBI-GEO ]     ARX [ SEEK ]   ARX [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96QS3 (Uniprot)
NextProtQ96QS3  [Medical]
With graphics : InterProQ96QS3
Splice isoforms : SwissVarQ96QS3 (Swissvar)
Domaine pattern : Prosite (Expaxy)HOMEOBOX_1 (PS00027)    HOMEOBOX_2 (PS50071)    OAR (PS50803)   
Domains : Interpro (EBI)Homeobox_CS [organisation]   Homeobox_dom [organisation]   Homeodomain-like [organisation]   OAR_dom [organisation]  
Related proteins : CluSTrQ96QS3
Domain families : Pfam (Sanger)Homeobox (PF00046)    OAR (PF03826)   
Domain families : Pfam (NCBI)pfam00046    pfam03826   
Domain families : Smart (EMBL)HOX (SM00389)  
DMDM Disease mutations170302
Blocks (Seattle)Q96QS3
Human Protein AtlasENSG00000004848 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ96QS3
HPRD02307
IPIIPI00045066   
Protein Interaction databases
DIP (DOE-UCLA)Q96QS3
IntAct (EBI)Q96QS3
FunCoupENSG00000004848
BioGRIDARX
InParanoidQ96QS3
Interologous Interaction database Q96QS3
IntegromeDBARX
STRING (EMBL)ARX
Ontologies - Pathways
Ontology : AmiGOchromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  axon guidance  globus pallidus development  cerebral cortex tangential migration  embryonic olfactory bulb interneuron precursor migration  cell proliferation in forebrain  cerebral cortex GABAergic interneuron migration  regulation of cell proliferation  sequence-specific DNA binding  lipid digestion  positive regulation of organ growth  epithelial cell fate commitment  
Ontology : EGO-EBIchromatin binding  sequence-specific DNA binding transcription factor activity  nucleus  transcription, DNA-templated  regulation of transcription, DNA-templated  axon guidance  globus pallidus development  cerebral cortex tangential migration  embryonic olfactory bulb interneuron precursor migration  cell proliferation in forebrain  cerebral cortex GABAergic interneuron migration  regulation of cell proliferation  sequence-specific DNA binding  lipid digestion  positive regulation of organ growth  epithelial cell fate commitment  
Protein Interaction DatabaseARX
Wikipedia pathwaysARX
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ARX
snp3D : Map Gene to Disease170302
SNP (GeneSNP Utah)ARX
SNP : HGBaseARX
Genetic variants : HAPMAPARX
Exome VariantARX
1000_GenomesARX 
ICGC programENSG00000004848 
Somatic Mutations in Cancer : COSMICARX 
CONAN: Copy Number AnalysisARX 
Mutations and Diseases : HGMDARX
Mutations and Diseases : intOGenARX
Genomic VariantsARX  ARX [DGVbeta]
dbVarARX
ClinVarARX
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM300004    300215    300382    300419    308350    309510   
MedgenARX
GENETestsARX
Disease Genetic AssociationARX
Huge Navigator ARX [HugePedia]  ARX [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneARX
Homology/Alignments : Family Browser (UCSC)ARX
Phylogenetic Trees/Animal Genes : TreeFamARX
Chemical/Protein Interactions : CTD170302
Chemical/Pharm GKB GenePA25024
Clinical trialARX
Cancer Resource (Charite)ENSG00000004848
Other databases
Probes
Litterature
PubMed66 Pubmed reference(s) in Entrez
CoreMineARX
iHOPARX
OncoSearchARX
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Tue Aug 26 16:38:50 CEST 2014

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