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ASAP3 (ArfGAP with SH3 domain, ankyrin repeat and PH domain 3)

Identity

Alias_namesbeta 6
DDEFL1
Alias_symbol (synonym)FLJ20199
UPLC1
CENTB6
Other aliasACAP4
HGNC (Hugo) ASAP3
LocusID (NCBI) 55616
Atlas_Id 42769
Location 1p36.12  [Link to chromosome band 1p36]
Location_base_pair Starts at 23428563 and ends at 23484257 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ATF7IP (12p13.1) / ASAP3 (1p36.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASAP3   14987
Cards
Entrez_Gene (NCBI)ASAP3  55616  ArfGAP with SH3 domain, ankyrin repeat and PH domain 3
AliasesACAP4; CENTB6; DDEFL1; UPLC1
GeneCards (Weizmann)ASAP3
Ensembl hg19 (Hinxton)ENSG00000088280 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000088280 [Gene_View]  chr1:23428563-23484257 [Contig_View]  ASAP3 [Vega]
ICGC DataPortalENSG00000088280
TCGA cBioPortalASAP3
AceView (NCBI)ASAP3
Genatlas (Paris)ASAP3
WikiGenes55616
SOURCE (Princeton)ASAP3
Genetics Home Reference (NIH)ASAP3
Genomic and cartography
GoldenPath hg38 (UCSC)ASAP3  -     chr1:23428563-23484257 -  1p36.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASAP3  -     1p36.12   [Description]    (hg19-Feb_2009)
EnsemblASAP3 - 1p36.12 [CytoView hg19]  ASAP3 - 1p36.12 [CytoView hg38]
Mapping of homologs : NCBIASAP3 [Mapview hg19]  ASAP3 [Mapview hg38]
OMIM616594   
Gene and transcription
Genbank (Entrez)AB056749 AK000206 AK000253 AK074319 AK092291
RefSeq transcript (Entrez)NM_001143778 NM_017707
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASAP3
Cluster EST : UnigeneHs.437379 [ NCBI ]
CGAP (NCI)Hs.437379
Alternative Splicing GalleryENSG00000088280
Gene ExpressionASAP3 [ NCBI-GEO ]   ASAP3 [ EBI - ARRAY_EXPRESS ]   ASAP3 [ SEEK ]   ASAP3 [ MEM ]
Gene Expression Viewer (FireBrowse)ASAP3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55616
GTEX Portal (Tissue expression)ASAP3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8TDY4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8TDY4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8TDY4
Splice isoforms : SwissVarQ8TDY4
PhosPhoSitePlusQ8TDY4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    ARFGAP (PS50115)    PH_DOMAIN (PS50003)   
Domains : Interpro (EBI)AH/BAR-dom    Ankyrin_rpt    Ankyrin_rpt-contain_dom    ArfGAP    ASAP3    PH_dom-like    PH_domain   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    ArfGap (PF01412)    PH (PF00169)   
Domain families : Pfam (NCBI)pfam12796    pfam01412    pfam00169   
Domain families : Smart (EMBL)ANK (SM00248)  ArfGap (SM00105)  PH (SM00233)  
Conserved Domain (NCBI)ASAP3
DMDM Disease mutations55616
Blocks (Seattle)ASAP3
PDB (SRS)2B0O    3LVQ    3LVR   
PDB (PDBSum)2B0O    3LVQ    3LVR   
PDB (IMB)2B0O    3LVQ    3LVR   
PDB (RSDB)2B0O    3LVQ    3LVR   
Structural Biology KnowledgeBase2B0O    3LVQ    3LVR   
SCOP (Structural Classification of Proteins)2B0O    3LVQ    3LVR   
CATH (Classification of proteins structures)2B0O    3LVQ    3LVR   
SuperfamilyQ8TDY4
Human Protein AtlasENSG00000088280
Peptide AtlasQ8TDY4
HPRD11662
IPIIPI00152667   IPI00744916   IPI00970963   IPI00448866   IPI01011072   IPI00977084   IPI00977778   IPI00983966   IPI00981403   
Protein Interaction databases
DIP (DOE-UCLA)Q8TDY4
IntAct (EBI)Q8TDY4
FunCoupENSG00000088280
BioGRIDASAP3
STRING (EMBL)ASAP3
ZODIACASAP3
Ontologies - Pathways
QuickGOQ8TDY4
Ontology : AmiGOruffle  GTPase activator activity  protein binding  nucleoplasm  cytosol  focal adhesion  cell migration  intracellular membrane-bounded organelle  positive regulation of GTPase activity  metal ion binding  regulation of stress fiber assembly  
Ontology : EGO-EBIruffle  GTPase activator activity  protein binding  nucleoplasm  cytosol  focal adhesion  cell migration  intracellular membrane-bounded organelle  positive regulation of GTPase activity  metal ion binding  regulation of stress fiber assembly  
Pathways : KEGGEndocytosis    Fc gamma R-mediated phagocytosis   
NDEx NetworkASAP3
Atlas of Cancer Signalling NetworkASAP3
Wikipedia pathwaysASAP3
Orthology - Evolution
OrthoDB55616
GeneTree (enSembl)ENSG00000088280
Phylogenetic Trees/Animal Genes : TreeFamASAP3
HOVERGENQ8TDY4
HOGENOMQ8TDY4
Homologs : HomoloGeneASAP3
Homology/Alignments : Family Browser (UCSC)ASAP3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASAP3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASAP3
dbVarASAP3
ClinVarASAP3
1000_GenomesASAP3 
Exome Variant ServerASAP3
ExAC (Exome Aggregation Consortium)ASAP3 (select the gene name)
Genetic variants : HAPMAP55616
Genomic Variants (DGV)ASAP3 [DGVbeta]
DECIPHERASAP3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASAP3 
Mutations
ICGC Data PortalASAP3 
TCGA Data PortalASAP3 
Broad Tumor PortalASAP3
OASIS PortalASAP3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASAP3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASAP3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASAP3
DgiDB (Drug Gene Interaction Database)ASAP3
DoCM (Curated mutations)ASAP3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASAP3 (select a term)
intoGenASAP3
Cancer3DASAP3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616594   
Orphanet
MedgenASAP3
Genetic Testing Registry ASAP3
NextProtQ8TDY4 [Medical]
TSGene55616
GENETestsASAP3
Huge Navigator ASAP3 [HugePedia]
snp3D : Map Gene to Disease55616
BioCentury BCIQASAP3
ClinGenASAP3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55616
Chemical/Pharm GKB GenePA164716179
Clinical trialASAP3
Miscellaneous
canSAR (ICR)ASAP3 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASAP3
EVEXASAP3
GoPubMedASAP3
iHOPASAP3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:52 CEST 2017

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