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ASB1 (ankyrin repeat and SOCS box containing 1)

Identity

Alias_namesankyrin repeat and SOCS box-containing 1
Alias_symbol (synonym)ASB-1
Other alias
HGNC (Hugo) ASB1
LocusID (NCBI) 51665
Atlas_Id 60548
Location 2q37.3  [Link to chromosome band 2q37]
Location_base_pair Starts at 238426928 and ends at 238452250 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASB1 (2q37.3) / ASB1 (2q37.3)ASB1 (2q37.3) / CLVS1 (8q12.3)ASB1 (2q37.3) / TRAF3IP1 (2q37.3)
ASB1 TRAF3IP1ASB1 CLVS1

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB1   16011
Cards
Entrez_Gene (NCBI)ASB1  51665  ankyrin repeat and SOCS box containing 1
AliasesASB-1
GeneCards (Weizmann)ASB1
Ensembl hg19 (Hinxton)ENSG00000065802 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000065802 [Gene_View]  chr2:238426928-238452250 [Contig_View]  ASB1 [Vega]
ICGC DataPortalENSG00000065802
TCGA cBioPortalASB1
AceView (NCBI)ASB1
Genatlas (Paris)ASB1
WikiGenes51665
SOURCE (Princeton)ASB1
Genetics Home Reference (NIH)ASB1
Genomic and cartography
GoldenPath hg38 (UCSC)ASB1  -     chr2:238426928-238452250 +  2q37.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB1  -     2q37.3   [Description]    (hg19-Feb_2009)
EnsemblASB1 - 2q37.3 [CytoView hg19]  ASB1 - 2q37.3 [CytoView hg38]
Mapping of homologs : NCBIASB1 [Mapview hg19]  ASB1 [Mapview hg38]
OMIM605758   
Gene and transcription
Genbank (Entrez)AB032972 AF055024 AF156777 BC014528 JF432653
RefSeq transcript (Entrez)NM_001040445 NM_001330196 NM_016114
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB1
Cluster EST : UnigeneHs.516788 [ NCBI ]
CGAP (NCI)Hs.516788
Alternative Splicing GalleryENSG00000065802
Gene ExpressionASB1 [ NCBI-GEO ]   ASB1 [ EBI - ARRAY_EXPRESS ]   ASB1 [ SEEK ]   ASB1 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51665
GTEX Portal (Tissue expression)ASB1
Human Protein AtlasENSG00000065802-ASB1 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y576   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y576  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y576
Splice isoforms : SwissVarQ9Y576
PhosPhoSitePlusQ9Y576
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB1
DMDM Disease mutations51665
Blocks (Seattle)ASB1
SuperfamilyQ9Y576
Human Protein Atlas [tissue]ENSG00000065802-ASB1 [tissue]
Peptide AtlasQ9Y576
HPRD05767
IPIIPI00294946   IPI00917051   IPI00917547   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y576
IntAct (EBI)Q9Y576
FunCoupENSG00000065802
BioGRIDASB1
STRING (EMBL)ASB1
ZODIACASB1
Ontologies - Pathways
QuickGOQ9Y576
Ontology : AmiGOmolecular_function  intracellular  protein ubiquitination  male genitalia development  intracellular signal transduction  negative regulation of cytokine biosynthetic process  
Ontology : EGO-EBImolecular_function  intracellular  protein ubiquitination  male genitalia development  intracellular signal transduction  negative regulation of cytokine biosynthetic process  
NDEx NetworkASB1
Atlas of Cancer Signalling NetworkASB1
Wikipedia pathwaysASB1
Orthology - Evolution
OrthoDB51665
GeneTree (enSembl)ENSG00000065802
Phylogenetic Trees/Animal Genes : TreeFamASB1
HOVERGENQ9Y576
HOGENOMQ9Y576
Homologs : HomoloGeneASB1
Homology/Alignments : Family Browser (UCSC)ASB1
Gene fusions - Rearrangements
Fusion: TCGA_MDACCASB1 TRAF3IP1
Fusion: TCGA_MDACCASB1 CLVS1
Tumor Fusion PortalASB1
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB1
dbVarASB1
ClinVarASB1
1000_GenomesASB1 
Exome Variant ServerASB1
ExAC (Exome Aggregation Consortium)ENSG00000065802
GNOMAD BrowserENSG00000065802
Genetic variants : HAPMAP51665
Genomic Variants (DGV)ASB1 [DGVbeta]
DECIPHERASB1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB1 
Mutations
ICGC Data PortalASB1 
TCGA Data PortalASB1 
Broad Tumor PortalASB1
OASIS PortalASB1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB1
DgiDB (Drug Gene Interaction Database)ASB1
DoCM (Curated mutations)ASB1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB1 (select a term)
intoGenASB1
Cancer3DASB1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605758   
Orphanet
DisGeNETASB1
MedgenASB1
Genetic Testing Registry ASB1
NextProtQ9Y576 [Medical]
TSGene51665
GENETestsASB1
Target ValidationASB1
Huge Navigator ASB1 [HugePedia]
snp3D : Map Gene to Disease51665
BioCentury BCIQASB1
ClinGenASB1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51665
Chemical/Pharm GKB GenePA25027
Clinical trialASB1
Miscellaneous
canSAR (ICR)ASB1 (select the gene name)
Probes
Litterature
PubMed17 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB1
EVEXASB1
GoPubMedASB1
iHOPASB1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:03:56 CET 2017

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