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ASB10 (ankyrin repeat and SOCS box containing 10)

Identity

Alias_namesGLC1F
ankyrin repeat and SOCS box-containing 10
glaucoma 1, open angle, F (adult-onset)
Other alias
HGNC (Hugo) ASB10
LocusID (NCBI) 136371
Atlas_Id 60549
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151175698 and ends at 151187391 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB10   17185
Cards
Entrez_Gene (NCBI)ASB10  136371  ankyrin repeat and SOCS box containing 10
AliasesGLC1F
GeneCards (Weizmann)ASB10
Ensembl hg19 (Hinxton)ENSG00000146926 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000146926 [Gene_View]  chr7:151175698-151187391 [Contig_View]  ASB10 [Vega]
ICGC DataPortalENSG00000146926
TCGA cBioPortalASB10
AceView (NCBI)ASB10
Genatlas (Paris)ASB10
WikiGenes136371
SOURCE (Princeton)ASB10
Genetics Home Reference (NIH)ASB10
Genomic and cartography
GoldenPath hg38 (UCSC)ASB10  -     chr7:151175698-151187391 -  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB10  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblASB10 - 7q36.1 [CytoView hg19]  ASB10 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIASB10 [Mapview hg19]  ASB10 [Mapview hg38]
OMIM603383   615054   
Gene and transcription
Genbank (Entrez)AF417920 AK055536 AK125565 AK315114 BC126351
RefSeq transcript (Entrez)NM_001142459 NM_001142460 NM_080871
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB10
Cluster EST : UnigeneHs.647081 [ NCBI ]
CGAP (NCI)Hs.647081
Alternative Splicing GalleryENSG00000146926
Gene ExpressionASB10 [ NCBI-GEO ]   ASB10 [ EBI - ARRAY_EXPRESS ]   ASB10 [ SEEK ]   ASB10 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB10 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)136371
GTEX Portal (Tissue expression)ASB10
Human Protein AtlasENSG00000146926-ASB10 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXI3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXI3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXI3
Splice isoforms : SwissVarQ8WXI3
PhosPhoSitePlusQ8WXI3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB10
DMDM Disease mutations136371
Blocks (Seattle)ASB10
SuperfamilyQ8WXI3
Human Protein Atlas [tissue]ENSG00000146926-ASB10 [tissue]
Peptide AtlasQ8WXI3
IPIIPI00103549   IPI00915331   IPI00827744   IPI00926052   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXI3
IntAct (EBI)Q8WXI3
FunCoupENSG00000146926
BioGRIDASB10
STRING (EMBL)ASB10
ZODIACASB10
Ontologies - Pathways
QuickGOQ8WXI3
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
NDEx NetworkASB10
Atlas of Cancer Signalling NetworkASB10
Wikipedia pathwaysASB10
Orthology - Evolution
OrthoDB136371
GeneTree (enSembl)ENSG00000146926
Phylogenetic Trees/Animal Genes : TreeFamASB10
HOVERGENQ8WXI3
HOGENOMQ8WXI3
Homologs : HomoloGeneASB10
Homology/Alignments : Family Browser (UCSC)ASB10
Gene fusions - Rearrangements
Tumor Fusion PortalASB10
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB10 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB10
dbVarASB10
ClinVarASB10
1000_GenomesASB10 
Exome Variant ServerASB10
ExAC (Exome Aggregation Consortium)ENSG00000146926
GNOMAD BrowserENSG00000146926
Genetic variants : HAPMAP136371
Genomic Variants (DGV)ASB10 [DGVbeta]
DECIPHERASB10 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB10 
Mutations
ICGC Data PortalASB10 
TCGA Data PortalASB10 
Broad Tumor PortalASB10
OASIS PortalASB10 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB10  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB10
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB10
DgiDB (Drug Gene Interaction Database)ASB10
DoCM (Curated mutations)ASB10 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB10 (select a term)
intoGenASB10
Cancer3DASB10(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM603383    615054   
Orphanet
DisGeNETASB10
MedgenASB10
Genetic Testing Registry ASB10
NextProtQ8WXI3 [Medical]
TSGene136371
GENETestsASB10
Target ValidationASB10
Huge Navigator ASB10 [HugePedia]
snp3D : Map Gene to Disease136371
BioCentury BCIQASB10
ClinGenASB10
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD136371
Chemical/Pharm GKB GenePA25028
Clinical trialASB10
Miscellaneous
canSAR (ICR)ASB10 (select the gene name)
Probes
Litterature
PubMed15 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB10
EVEXASB10
GoPubMedASB10
iHOPASB10
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:15:42 CET 2017

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