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ASB12 (ankyrin repeat and SOCS box containing 12)

Identity

Alias_namesankyrin repeat and SOCS box-containing 12
Alias_symbol (synonym)FLJ39577
Other alias-
HGNC (Hugo) ASB12
LocusID (NCBI) 142689
Atlas_Id 60551
Location Xq11.2  [Link to chromosome band Xq11]
Location_base_pair Starts at 64224192 and ends at 64230631 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB12   19763
Cards
Entrez_Gene (NCBI)ASB12  142689  ankyrin repeat and SOCS box containing 12
Aliases
GeneCards (Weizmann)ASB12
Ensembl hg19 (Hinxton)ENSG00000198881 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000198881 [Gene_View]  chrX:64224192-64230631 [Contig_View]  ASB12 [Vega]
ICGC DataPortalENSG00000198881
TCGA cBioPortalASB12
AceView (NCBI)ASB12
Genatlas (Paris)ASB12
WikiGenes142689
SOURCE (Princeton)ASB12
Genetics Home Reference (NIH)ASB12
Genomic and cartography
GoldenPath hg38 (UCSC)ASB12  -     chrX:64224192-64230631 -  Xq11.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB12  -     Xq11.2   [Description]    (hg19-Feb_2009)
EnsemblASB12 - Xq11.2 [CytoView hg19]  ASB12 - Xq11.2 [CytoView hg38]
Mapping of homologs : NCBIASB12 [Mapview hg19]  ASB12 [Mapview hg38]
OMIM300891   
Gene and transcription
Genbank (Entrez)AA349954 AF403030 AK096896 AK300684 BC069436
RefSeq transcript (Entrez)NM_130388
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB12
Cluster EST : UnigeneHs.56281 [ NCBI ]
CGAP (NCI)Hs.56281
Alternative Splicing GalleryENSG00000198881
Gene ExpressionASB12 [ NCBI-GEO ]   ASB12 [ EBI - ARRAY_EXPRESS ]   ASB12 [ SEEK ]   ASB12 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB12 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)142689
GTEX Portal (Tissue expression)ASB12
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXK4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXK4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXK4
Splice isoforms : SwissVarQ8WXK4
PhosPhoSitePlusQ8WXK4
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB12
DMDM Disease mutations142689
Blocks (Seattle)ASB12
SuperfamilyQ8WXK4
Human Protein AtlasENSG00000198881
Peptide AtlasQ8WXK4
HPRD06451
IPIIPI01015787   IPI00909953   IPI01015712   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXK4
IntAct (EBI)Q8WXK4
FunCoupENSG00000198881
BioGRIDASB12
STRING (EMBL)ASB12
ZODIACASB12
Ontologies - Pathways
QuickGOQ8WXK4
Ontology : AmiGOintracellular  protein ubiquitination  intracellular signal transduction  
Ontology : EGO-EBIintracellular  protein ubiquitination  intracellular signal transduction  
NDEx NetworkASB12
Atlas of Cancer Signalling NetworkASB12
Wikipedia pathwaysASB12
Orthology - Evolution
OrthoDB142689
GeneTree (enSembl)ENSG00000198881
Phylogenetic Trees/Animal Genes : TreeFamASB12
HOVERGENQ8WXK4
HOGENOMQ8WXK4
Homologs : HomoloGeneASB12
Homology/Alignments : Family Browser (UCSC)ASB12
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB12 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB12
dbVarASB12
ClinVarASB12
1000_GenomesASB12 
Exome Variant ServerASB12
ExAC (Exome Aggregation Consortium)ASB12 (select the gene name)
Genetic variants : HAPMAP142689
Genomic Variants (DGV)ASB12 [DGVbeta]
DECIPHERASB12 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB12 
Mutations
ICGC Data PortalASB12 
TCGA Data PortalASB12 
Broad Tumor PortalASB12
OASIS PortalASB12 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB12  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB12
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ASB12
DgiDB (Drug Gene Interaction Database)ASB12
DoCM (Curated mutations)ASB12 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB12 (select a term)
intoGenASB12
Cancer3DASB12(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300891   
Orphanet
MedgenASB12
Genetic Testing Registry ASB12
NextProtQ8WXK4 [Medical]
TSGene142689
GENETestsASB12
Target ValidationASB12
Huge Navigator ASB12 [HugePedia]
snp3D : Map Gene to Disease142689
BioCentury BCIQASB12
ClinGenASB12
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD142689
Chemical/Pharm GKB GenePA134937084
Clinical trialASB12
Miscellaneous
canSAR (ICR)ASB12 (select the gene name)
Probes
Litterature
PubMed11 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB12
EVEXASB12
GoPubMedASB12
iHOPASB12
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:51 CEST 2017

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