Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASB13 (ankyrin repeat and SOCS box containing 13)

Identity

Alias (NCBI)-
HGNC (Hugo) ASB13
HGNC Alias symbFLJ13134
MGC19879
HGNC Previous nameankyrin repeat and SOCS box-containing 13
LocusID (NCBI) 79754
Atlas_Id 60552
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5638867 and ends at 5666595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASB13 (10p15.1) / SOX7 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ASB13   19765
Cards
Entrez_Gene (NCBI)ASB13    ankyrin repeat and SOCS box containing 13
Aliases
GeneCards (Weizmann)ASB13
Ensembl hg19 (Hinxton)ENSG00000196372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196372 [Gene_View]  ENSG00000196372 [Sequence]  chr10:5638867-5666595 [Contig_View]  ASB13 [Vega]
ICGC DataPortalENSG00000196372
TCGA cBioPortalASB13
AceView (NCBI)ASB13
Genatlas (Paris)ASB13
SOURCE (Princeton)ASB13
Genetics Home Reference (NIH)ASB13
Genomic and cartography
GoldenPath hg38 (UCSC)ASB13  -     chr10:5638867-5666595 -  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB13  -     10p15.1   [Description]    (hg19-Feb_2009)
GoldenPathASB13 - 10p15.1 [CytoView hg19]  ASB13 - 10p15.1 [CytoView hg38]
ImmunoBaseENSG00000196372
Genome Data Viewer NCBIASB13 [Mapview hg19]  
OMIM615055   
Gene and transcription
Genbank (Entrez)AF403031 AI377400 AK023196 AK091935 AK292071
RefSeq transcript (Entrez)NM_024701
Consensus coding sequences : CCDS (NCBI)ASB13
Gene ExpressionASB13 [ NCBI-GEO ]   ASB13 [ EBI - ARRAY_EXPRESS ]   ASB13 [ SEEK ]   ASB13 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB13 [ Firebrowse - Broad ]
GenevisibleExpression of ASB13 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79754
GTEX Portal (Tissue expression)ASB13
Human Protein AtlasENSG00000196372-ASB13 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXK3
PhosPhoSitePlusQ8WXK3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    ASB13_SOCS    SOCS_box    SOCS_box-like_dom_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB13
SuperfamilyQ8WXK3
AlphaFold pdb e-kbQ8WXK3   
Human Protein Atlas [tissue]ENSG00000196372-ASB13 [tissue]
HPRD10667
Protein Interaction databases
DIP (DOE-UCLA)Q8WXK3
IntAct (EBI)Q8WXK3
BioGRIDASB13
STRING (EMBL)ASB13
ZODIACASB13
Ontologies - Pathways
QuickGOQ8WXK3
Ontology : AmiGOprotein binding  cytosol  protein ubiquitination  intracellular signal transduction  post-translational protein modification  
Ontology : EGO-EBIprotein binding  cytosol  protein ubiquitination  intracellular signal transduction  post-translational protein modification  
NDEx NetworkASB13
Atlas of Cancer Signalling NetworkASB13
Wikipedia pathwaysASB13
Orthology - Evolution
OrthoDB79754
GeneTree (enSembl)ENSG00000196372
Phylogenetic Trees/Animal Genes : TreeFamASB13
Homologs : HomoloGeneASB13
Homology/Alignments : Family Browser (UCSC)ASB13
Gene fusions - Rearrangements
Fusion : QuiverASB13
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB13
dbVarASB13
ClinVarASB13
MonarchASB13
1000_GenomesASB13 
Exome Variant ServerASB13
GNOMAD BrowserENSG00000196372
Varsome BrowserASB13
ACMGASB13 variants
VarityQ8WXK3
Genomic Variants (DGV)ASB13 [DGVbeta]
DECIPHERASB13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB13 
Mutations
ICGC Data PortalASB13 
TCGA Data PortalASB13 
Broad Tumor PortalASB13
OASIS PortalASB13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB13  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DASB13
Mutations and Diseases : HGMDASB13
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaASB13
DgiDB (Drug Gene Interaction Database)ASB13
DoCM (Curated mutations)ASB13
CIViC (Clinical Interpretations of Variants in Cancer)ASB13
Cancer3DASB13
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615055   
Orphanet
DisGeNETASB13
MedgenASB13
Genetic Testing Registry ASB13
NextProtQ8WXK3 [Medical]
GENETestsASB13
Target ValidationASB13
Huge Navigator ASB13 [HugePedia]
ClinGenASB13
Clinical trials, drugs, therapy
MyCancerGenomeASB13
Protein Interactions : CTDASB13
Pharm GKB GenePA134992129
PharosQ8WXK3
Clinical trialASB13
Miscellaneous
canSAR (ICR)ASB13
HarmonizomeASB13
DataMed IndexASB13
Probes
Litterature
PubMed25 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXASB13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:42:44 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.