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ASB13 (ankyrin repeat and SOCS box containing 13)

Identity

Alias_namesankyrin repeat and SOCS box-containing 13
Alias_symbol (synonym)FLJ13134
MGC19879
Other alias-
HGNC (Hugo) ASB13
LocusID (NCBI) 79754
Atlas_Id 60552
Location 10p15.1  [Link to chromosome band 10p15]
Location_base_pair Starts at 5638857 and ends at 5666595 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASB13 (10p15.1) / SOX7 (8p23.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB13   19765
Cards
Entrez_Gene (NCBI)ASB13  79754  ankyrin repeat and SOCS box containing 13
Aliases
GeneCards (Weizmann)ASB13
Ensembl hg19 (Hinxton)ENSG00000196372 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196372 [Gene_View]  chr10:5638857-5666595 [Contig_View]  ASB13 [Vega]
ICGC DataPortalENSG00000196372
TCGA cBioPortalASB13
AceView (NCBI)ASB13
Genatlas (Paris)ASB13
WikiGenes79754
SOURCE (Princeton)ASB13
Genetics Home Reference (NIH)ASB13
Genomic and cartography
GoldenPath hg38 (UCSC)ASB13  -     chr10:5638857-5666595 -  10p15.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB13  -     10p15.1   [Description]    (hg19-Feb_2009)
EnsemblASB13 - 10p15.1 [CytoView hg19]  ASB13 - 10p15.1 [CytoView hg38]
Mapping of homologs : NCBIASB13 [Mapview hg19]  ASB13 [Mapview hg38]
OMIM615055   
Gene and transcription
Genbank (Entrez)AF403031 AI377400 AK023196 AK091935 AK292071
RefSeq transcript (Entrez)NM_024701
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB13
Cluster EST : UnigeneHs.445899 [ NCBI ]
CGAP (NCI)Hs.445899
Alternative Splicing GalleryENSG00000196372
Gene ExpressionASB13 [ NCBI-GEO ]   ASB13 [ EBI - ARRAY_EXPRESS ]   ASB13 [ SEEK ]   ASB13 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB13 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)79754
GTEX Portal (Tissue expression)ASB13
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXK3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXK3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXK3
Splice isoforms : SwissVarQ8WXK3
PhosPhoSitePlusQ8WXK3
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB13
DMDM Disease mutations79754
Blocks (Seattle)ASB13
SuperfamilyQ8WXK3
Human Protein AtlasENSG00000196372
Peptide AtlasQ8WXK3
HPRD10667
IPIIPI00103564   IPI00478143   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXK3
IntAct (EBI)Q8WXK3
FunCoupENSG00000196372
BioGRIDASB13
STRING (EMBL)ASB13
ZODIACASB13
Ontologies - Pathways
QuickGOQ8WXK3
Ontology : AmiGOprotein binding  intracellular  protein ubiquitination  intracellular signal transduction  
Ontology : EGO-EBIprotein binding  intracellular  protein ubiquitination  intracellular signal transduction  
NDEx NetworkASB13
Atlas of Cancer Signalling NetworkASB13
Wikipedia pathwaysASB13
Orthology - Evolution
OrthoDB79754
GeneTree (enSembl)ENSG00000196372
Phylogenetic Trees/Animal Genes : TreeFamASB13
HOVERGENQ8WXK3
HOGENOMQ8WXK3
Homologs : HomoloGeneASB13
Homology/Alignments : Family Browser (UCSC)ASB13
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB13 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB13
dbVarASB13
ClinVarASB13
1000_GenomesASB13 
Exome Variant ServerASB13
ExAC (Exome Aggregation Consortium)ASB13 (select the gene name)
Genetic variants : HAPMAP79754
Genomic Variants (DGV)ASB13 [DGVbeta]
DECIPHERASB13 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB13 
Mutations
ICGC Data PortalASB13 
TCGA Data PortalASB13 
Broad Tumor PortalASB13
OASIS PortalASB13 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB13  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB13
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB13
DgiDB (Drug Gene Interaction Database)ASB13
DoCM (Curated mutations)ASB13 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB13 (select a term)
intoGenASB13
Cancer3DASB13(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615055   
Orphanet
MedgenASB13
Genetic Testing Registry ASB13
NextProtQ8WXK3 [Medical]
TSGene79754
GENETestsASB13
Target ValidationASB13
Huge Navigator ASB13 [HugePedia]
snp3D : Map Gene to Disease79754
BioCentury BCIQASB13
ClinGenASB13
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD79754
Chemical/Pharm GKB GenePA134992129
Clinical trialASB13
Miscellaneous
canSAR (ICR)ASB13 (select the gene name)
Probes
Litterature
PubMed16 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB13
EVEXASB13
GoPubMedASB13
iHOPASB13
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:57 CEST 2017

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