Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASB16-AS1 (ASB16 antisense RNA 1)

Identity

Alias_namesC17orf65
chromosome 17 open reading frame 65
Alias_symbol (synonym)DKFZp762C2414
Other alias
HGNC (Hugo) ASB16-AS1
LocusID (NCBI) 339201
Atlas_Id 60556
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44175986 and ends at 44186671 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB16-AS1   25442
Cards
Entrez_Gene (NCBI)ASB16-AS1  339201  ASB16 antisense RNA 1
AliasesC17orf65
GeneCards (Weizmann)ASB16-AS1
Ensembl hg19 (Hinxton)ENSG00000267080 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000267080 [Gene_View]  chr17:44175986-44186671 [Contig_View]  ASB16-AS1 [Vega]
ICGC DataPortalENSG00000267080
TCGA cBioPortalASB16-AS1
AceView (NCBI)ASB16-AS1
Genatlas (Paris)ASB16-AS1
WikiGenes339201
SOURCE (Princeton)ASB16-AS1
Genetics Home Reference (NIH)ASB16-AS1
Genomic and cartography
GoldenPath hg38 (UCSC)ASB16-AS1  -     chr17:44175986-44186671 -  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB16-AS1  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblASB16-AS1 - 17q21.31 [CytoView hg19]  ASB16-AS1 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIASB16-AS1 [Mapview hg19]  ASB16-AS1 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK055685 BC009448 BC100964 BC100965 BC100966
RefSeq transcript (Entrez)NM_178542
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB16-AS1
Cluster EST : UnigeneHs.656564 [ NCBI ]
CGAP (NCI)Hs.656564
Alternative Splicing GalleryENSG00000267080
Gene ExpressionASB16-AS1 [ NCBI-GEO ]   ASB16-AS1 [ EBI - ARRAY_EXPRESS ]   ASB16-AS1 [ SEEK ]   ASB16-AS1 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB16-AS1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)339201
GTEX Portal (Tissue expression)ASB16-AS1
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ495Z4   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ495Z4  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ495Z4
Splice isoforms : SwissVarQ495Z4
PhosPhoSitePlusQ495Z4
Domain families : Pfam (Sanger)
Domain families : Pfam (NCBI)
Conserved Domain (NCBI)ASB16-AS1
DMDM Disease mutations339201
Blocks (Seattle)ASB16-AS1
SuperfamilyQ495Z4
Human Protein AtlasENSG00000267080
Peptide AtlasQ495Z4
HPRD13231
IPIIPI00166579   
Protein Interaction databases
DIP (DOE-UCLA)Q495Z4
IntAct (EBI)Q495Z4
FunCoupENSG00000267080
BioGRIDASB16-AS1
STRING (EMBL)ASB16-AS1
ZODIACASB16-AS1
Ontologies - Pathways
QuickGOQ495Z4
Ontology : AmiGO
Ontology : EGO-EBI
NDEx NetworkASB16-AS1
Atlas of Cancer Signalling NetworkASB16-AS1
Wikipedia pathwaysASB16-AS1
Orthology - Evolution
OrthoDB339201
GeneTree (enSembl)ENSG00000267080
Phylogenetic Trees/Animal Genes : TreeFamASB16-AS1
HOVERGENQ495Z4
HOGENOMQ495Z4
Homologs : HomoloGeneASB16-AS1
Homology/Alignments : Family Browser (UCSC)ASB16-AS1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB16-AS1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB16-AS1
dbVarASB16-AS1
ClinVarASB16-AS1
1000_GenomesASB16-AS1 
Exome Variant ServerASB16-AS1
ExAC (Exome Aggregation Consortium)ASB16-AS1 (select the gene name)
Genetic variants : HAPMAP339201
Genomic Variants (DGV)ASB16-AS1 [DGVbeta]
DECIPHERASB16-AS1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB16-AS1 
Mutations
ICGC Data PortalASB16-AS1 
TCGA Data PortalASB16-AS1 
Broad Tumor PortalASB16-AS1
OASIS PortalASB16-AS1 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDASB16-AS1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB16-AS1
DgiDB (Drug Gene Interaction Database)ASB16-AS1
DoCM (Curated mutations)ASB16-AS1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB16-AS1 (select a term)
intoGenASB16-AS1
Cancer3DASB16-AS1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASB16-AS1
Genetic Testing Registry ASB16-AS1
NextProtQ495Z4 [Medical]
TSGene339201
GENETestsASB16-AS1
Target ValidationASB16-AS1
Huge Navigator ASB16-AS1 [HugePedia]
snp3D : Map Gene to Disease339201
BioCentury BCIQASB16-AS1
ClinGenASB16-AS1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD339201
Chemical/Pharm GKB GenePA142672248
Clinical trialASB16-AS1
Miscellaneous
canSAR (ICR)ASB16-AS1 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB16-AS1
EVEXASB16-AS1
GoPubMedASB16-AS1
iHOPASB16-AS1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Sep 18 13:01:52 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.