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ASB16 (ankyrin repeat and SOCS box containing 16)

Identity

Alias_namesankyrin repeat and SOCS box-containing 16
Alias_symbol (synonym)FLJ30165
Other alias-
HGNC (Hugo) ASB16
LocusID (NCBI) 92591
Atlas_Id 60555
Location 17q21.31  [Link to chromosome band 17q21]
Location_base_pair Starts at 44170706 and ends at 44179083 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB16   19768
Cards
Entrez_Gene (NCBI)ASB16  92591  ankyrin repeat and SOCS box containing 16
Aliases
GeneCards (Weizmann)ASB16
Ensembl hg19 (Hinxton)ENSG00000161664 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161664 [Gene_View]  chr17:44170706-44179083 [Contig_View]  ASB16 [Vega]
ICGC DataPortalENSG00000161664
TCGA cBioPortalASB16
AceView (NCBI)ASB16
Genatlas (Paris)ASB16
WikiGenes92591
SOURCE (Princeton)ASB16
Genetics Home Reference (NIH)ASB16
Genomic and cartography
GoldenPath hg38 (UCSC)ASB16  -     chr17:44170706-44179083 +  17q21.31   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB16  -     17q21.31   [Description]    (hg19-Feb_2009)
EnsemblASB16 - 17q21.31 [CytoView hg19]  ASB16 - 17q21.31 [CytoView hg38]
Mapping of homologs : NCBIASB16 [Mapview hg19]  ASB16 [Mapview hg38]
OMIM615056   
Gene and transcription
Genbank (Entrez)AF403034 AK054727 AK314595 AY557346 BC075088
RefSeq transcript (Entrez)NM_080863
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB16
Cluster EST : UnigeneHs.534517 [ NCBI ]
CGAP (NCI)Hs.534517
Alternative Splicing GalleryENSG00000161664
Gene ExpressionASB16 [ NCBI-GEO ]   ASB16 [ EBI - ARRAY_EXPRESS ]   ASB16 [ SEEK ]   ASB16 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB16 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)92591
GTEX Portal (Tissue expression)ASB16
Human Protein AtlasENSG00000161664-ASB16 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96NS5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ96NS5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ96NS5
Splice isoforms : SwissVarQ96NS5
PhosPhoSitePlusQ96NS5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB16
DMDM Disease mutations92591
Blocks (Seattle)ASB16
SuperfamilyQ96NS5
Human Protein Atlas [tissue]ENSG00000161664-ASB16 [tissue]
Peptide AtlasQ96NS5
HPRD10670
IPIIPI00289418   IPI00451702   
Protein Interaction databases
DIP (DOE-UCLA)Q96NS5
IntAct (EBI)Q96NS5
FunCoupENSG00000161664
BioGRIDASB16
STRING (EMBL)ASB16
ZODIACASB16
Ontologies - Pathways
QuickGOQ96NS5
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  protein binding  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  protein binding  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
NDEx NetworkASB16
Atlas of Cancer Signalling NetworkASB16
Wikipedia pathwaysASB16
Orthology - Evolution
OrthoDB92591
GeneTree (enSembl)ENSG00000161664
Phylogenetic Trees/Animal Genes : TreeFamASB16
HOVERGENQ96NS5
HOGENOMQ96NS5
Homologs : HomoloGeneASB16
Homology/Alignments : Family Browser (UCSC)ASB16
Gene fusions - Rearrangements
Tumor Fusion PortalASB16
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB16 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB16
dbVarASB16
ClinVarASB16
1000_GenomesASB16 
Exome Variant ServerASB16
ExAC (Exome Aggregation Consortium)ENSG00000161664
GNOMAD BrowserENSG00000161664
Genetic variants : HAPMAP92591
Genomic Variants (DGV)ASB16 [DGVbeta]
DECIPHERASB16 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB16 
Mutations
ICGC Data PortalASB16 
TCGA Data PortalASB16 
Broad Tumor PortalASB16
OASIS PortalASB16 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB16  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB16
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB16
DgiDB (Drug Gene Interaction Database)ASB16
DoCM (Curated mutations)ASB16 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB16 (select a term)
intoGenASB16
Cancer3DASB16(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615056   
Orphanet
DisGeNETASB16
MedgenASB16
Genetic Testing Registry ASB16
NextProtQ96NS5 [Medical]
TSGene92591
GENETestsASB16
Target ValidationASB16
Huge Navigator ASB16 [HugePedia]
snp3D : Map Gene to Disease92591
BioCentury BCIQASB16
ClinGenASB16
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD92591
Chemical/Pharm GKB GenePA134879678
Clinical trialASB16
Miscellaneous
canSAR (ICR)ASB16 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB16
EVEXASB16
GoPubMedASB16
iHOPASB16
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:34:55 CET 2017

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