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ASB17 (ankyrin repeat and SOCS box containing 17)

Identity

Alias_namesankyrin repeat and SOCS box-containing 17
Other aliasAsb-17
HGNC (Hugo) ASB17
LocusID (NCBI) 127247
Atlas_Id 60557
Location 1p31.1  [Link to chromosome band 1p31]
Location_base_pair Starts at 76384558 and ends at 76398116 bp from pter ( according to hg19-Feb_2009)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB17   19769
Cards
Entrez_Gene (NCBI)ASB17  127247  ankyrin repeat and SOCS box containing 17
AliasesAsb-17
GeneCards (Weizmann)ASB17
Ensembl hg19 (Hinxton)ENSG00000154007 [Gene_View]  chr1:76384558-76398116 [Contig_View]  ASB17 [Vega]
Ensembl hg38 (Hinxton)ENSG00000154007 [Gene_View]  chr1:76384558-76398116 [Contig_View]  ASB17 [Vega]
ICGC DataPortalENSG00000154007
TCGA cBioPortalASB17
AceView (NCBI)ASB17
Genatlas (Paris)ASB17
WikiGenes127247
SOURCE (Princeton)ASB17
Genetics Home Reference (NIH)ASB17
Genomic and cartography
GoldenPath hg19 (UCSC)ASB17  -     chr1:76384558-76398116 -  1p31.1   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASB17  -     1p31.1   [Description]    (hg38-Dec_2013)
EnsemblASB17 - 1p31.1 [CytoView hg19]  ASB17 - 1p31.1 [CytoView hg38]
Mapping of homologs : NCBIASB17 [Mapview hg19]  ASB17 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AF403035 AF429968 AK098606 BC022517 BC036573
RefSeq transcript (Entrez)NM_080868
RefSeq genomic (Entrez)NC_000001 NC_018912 NT_032977 NW_004929290
Consensus coding sequences : CCDS (NCBI)ASB17
Cluster EST : UnigeneHs.125423 [ NCBI ]
CGAP (NCI)Hs.125423
Alternative Splicing GalleryENSG00000154007
Gene ExpressionASB17 [ NCBI-GEO ]   ASB17 [ EBI - ARRAY_EXPRESS ]   ASB17 [ SEEK ]   ASB17 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB17 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)127247
GTEX Portal (Tissue expression)ASB17
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WXJ9   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WXJ9  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WXJ9
Splice isoforms : SwissVarQ8WXJ9
PhosPhoSitePlusQ8WXJ9
Domaine pattern : Prosite (Expaxy)SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_C   
Domain families : Pfam (Sanger)SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB17
DMDM Disease mutations127247
Blocks (Seattle)ASB17
SuperfamilyQ8WXJ9
Human Protein AtlasENSG00000154007
Peptide AtlasQ8WXJ9
HPRD10671
IPIIPI00218549   
Protein Interaction databases
DIP (DOE-UCLA)Q8WXJ9
IntAct (EBI)Q8WXJ9
FunCoupENSG00000154007
BioGRIDASB17
STRING (EMBL)ASB17
ZODIACASB17
Ontologies - Pathways
QuickGOQ8WXJ9
Ontology : AmiGOintracellular  protein ubiquitination  intracellular signal transduction  
Ontology : EGO-EBIintracellular  protein ubiquitination  intracellular signal transduction  
NDEx NetworkASB17
Atlas of Cancer Signalling NetworkASB17
Wikipedia pathwaysASB17
Orthology - Evolution
OrthoDB127247
GeneTree (enSembl)ENSG00000154007
Phylogenetic Trees/Animal Genes : TreeFamASB17
HOVERGENQ8WXJ9
HOGENOMQ8WXJ9
Homologs : HomoloGeneASB17
Homology/Alignments : Family Browser (UCSC)ASB17
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB17 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB17
dbVarASB17
ClinVarASB17
1000_GenomesASB17 
Exome Variant ServerASB17
ExAC (Exome Aggregation Consortium)ASB17 (select the gene name)
Genetic variants : HAPMAP127247
Genomic Variants (DGV)ASB17 [DGVbeta]
DECIPHER (Syndromes)1:76384558-76398116  ENSG00000154007
CONAN: Copy Number AnalysisASB17 
Mutations
ICGC Data PortalASB17 
TCGA Data PortalASB17 
Broad Tumor PortalASB17
OASIS PortalASB17 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB17  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB17
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB17
DgiDB (Drug Gene Interaction Database)ASB17
DoCM (Curated mutations)ASB17 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB17 (select a term)
intoGenASB17
Cancer3DASB17(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASB17
Genetic Testing Registry ASB17
NextProtQ8WXJ9 [Medical]
TSGene127247
GENETestsASB17
Huge Navigator ASB17 [HugePedia]
snp3D : Map Gene to Disease127247
BioCentury BCIQASB17
ClinGenASB17
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD127247
Chemical/Pharm GKB GenePA134958560
Clinical trialASB17
Miscellaneous
canSAR (ICR)ASB17 (select the gene name)
Probes
Litterature
PubMed9 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB17
EVEXASB17
GoPubMedASB17
iHOPASB17
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:10 CET 2017

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