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ASB18 (ankyrin repeat and SOCS box containing 18)

Identity

Alias_namesankyrin repeat and SOCS box-containing 18
Other aliasASB-18
HGNC (Hugo) ASB18
LocusID (NCBI) 401036
Atlas_Id 60558
Location 2q37.2  [Link to chromosome band 2q37]
Location_base_pair Starts at 236193452 and ends at 236264345 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
GIGYF2 (2q37.1) / ASB18 (2q37.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB18   19770
Cards
Entrez_Gene (NCBI)ASB18  401036  ankyrin repeat and SOCS box containing 18
AliasesASB-18
GeneCards (Weizmann)ASB18
Ensembl hg19 (Hinxton)ENSG00000182177 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000182177 [Gene_View]  chr2:236193452-236264345 [Contig_View]  ASB18 [Vega]
ICGC DataPortalENSG00000182177
TCGA cBioPortalASB18
AceView (NCBI)ASB18
Genatlas (Paris)ASB18
WikiGenes401036
SOURCE (Princeton)ASB18
Genetics Home Reference (NIH)ASB18
Genomic and cartography
GoldenPath hg38 (UCSC)ASB18  -     chr2:236193452-236264345 -  2q37.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB18  -     2q37.2   [Description]    (hg19-Feb_2009)
EnsemblASB18 - 2q37.2 [CytoView hg19]  ASB18 - 2q37.2 [CytoView hg38]
Mapping of homologs : NCBIASB18 [Mapview hg19]  ASB18 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AK123854 BC172346 BX647589
RefSeq transcript (Entrez)NM_212556
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB18
Cluster EST : UnigeneHs.639909 [ NCBI ]
CGAP (NCI)Hs.639909
Alternative Splicing GalleryENSG00000182177
Gene ExpressionASB18 [ NCBI-GEO ]   ASB18 [ EBI - ARRAY_EXPRESS ]   ASB18 [ SEEK ]   ASB18 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB18 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)401036
GTEX Portal (Tissue expression)ASB18
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ6ZVZ8   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ6ZVZ8  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ6ZVZ8
Splice isoforms : SwissVarQ6ZVZ8
PhosPhoSitePlusQ6ZVZ8
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Ank_3 (PF13606)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam13606    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB18
DMDM Disease mutations401036
Blocks (Seattle)ASB18
SuperfamilyQ6ZVZ8
Human Protein AtlasENSG00000182177
Peptide AtlasQ6ZVZ8
HPRD16514
IPIIPI00876910   IPI00414347   IPI00916155   IPI00847906   
Protein Interaction databases
DIP (DOE-UCLA)Q6ZVZ8
IntAct (EBI)Q6ZVZ8
FunCoupENSG00000182177
BioGRIDASB18
STRING (EMBL)ASB18
ZODIACASB18
Ontologies - Pathways
QuickGOQ6ZVZ8
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
NDEx NetworkASB18
Atlas of Cancer Signalling NetworkASB18
Wikipedia pathwaysASB18
Orthology - Evolution
OrthoDB401036
GeneTree (enSembl)ENSG00000182177
Phylogenetic Trees/Animal Genes : TreeFamASB18
HOVERGENQ6ZVZ8
HOGENOMQ6ZVZ8
Homologs : HomoloGeneASB18
Homology/Alignments : Family Browser (UCSC)ASB18
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB18 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB18
dbVarASB18
ClinVarASB18
1000_GenomesASB18 
Exome Variant ServerASB18
ExAC (Exome Aggregation Consortium)ASB18 (select the gene name)
Genetic variants : HAPMAP401036
Genomic Variants (DGV)ASB18 [DGVbeta]
DECIPHERASB18 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB18 
Mutations
ICGC Data PortalASB18 
TCGA Data PortalASB18 
Broad Tumor PortalASB18
OASIS PortalASB18 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB18  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB18
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB18
DgiDB (Drug Gene Interaction Database)ASB18
DoCM (Curated mutations)ASB18 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB18 (select a term)
intoGenASB18
Cancer3DASB18(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASB18
Genetic Testing Registry ASB18
NextProtQ6ZVZ8 [Medical]
TSGene401036
GENETestsASB18
Target ValidationASB18
Huge Navigator ASB18 [HugePedia]
snp3D : Map Gene to Disease401036
BioCentury BCIQASB18
ClinGenASB18
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD401036
Chemical/Pharm GKB GenePA134950797
Clinical trialASB18
Miscellaneous
canSAR (ICR)ASB18 (select the gene name)
Probes
Litterature
PubMed6 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB18
EVEXASB18
GoPubMedASB18
iHOPASB18
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:52 CEST 2017

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