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ASB2 (ankyrin repeat and SOCS box containing 2)

Identity

Other namesASB-2
HGNC (Hugo) ASB2
LocusID (NCBI) 51676
Location 14q32.12
Location_base_pair Starts at 94400499 and ends at 94443076 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 

External links

Nomenclature
HGNC (Hugo)ASB2   16012
Cards
Entrez_Gene (NCBI)ASB2  51676  ankyrin repeat and SOCS box containing 2
GeneCards (Weizmann)ASB2
Ensembl (Hinxton)ENSG00000100628 [Gene_View]  chr14:94400499-94443076 [Contig_View]  ASB2 [Vega]
ICGC DataPortalENSG00000100628
cBioPortalASB2
AceView (NCBI)ASB2
Genatlas (Paris)ASB2
WikiGenes51676
SOURCE (Princeton)NM_001202429 NM_016150
Genomic and cartography
GoldenPath (UCSC)ASB2  -  14q32.12   chr14:94400499-94443076 -  14q32.12   [Description]    (hg19-Feb_2009)
EnsemblASB2 - 14q32.12 [CytoView]
Mapping of homologs : NCBIASB2 [Mapview]
OMIM605759   
Gene and transcription
Genbank (Entrez)AB056723 AB488462 AF159164 AJ251238 AK002049
RefSeq transcript (Entrez)NM_001202429 NM_016150
RefSeq genomic (Entrez)AC_000146 NC_000014 NC_018925 NT_026437 NW_001838113 NW_004929393
Consensus coding sequences : CCDS (NCBI)ASB2
Cluster EST : UnigeneHs.510327 [ NCBI ]
CGAP (NCI)Hs.510327
Alternative Splicing : Fast-db (Paris)GSHG0009586
Alternative Splicing GalleryENSG00000100628
Gene ExpressionASB2 [ NCBI-GEO ]     ASB2 [ SEEK ]   ASB2 [ MEM ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ96Q27 (Uniprot)
NextProtQ96Q27  [Medical]
With graphics : InterProQ96Q27
Splice isoforms : SwissVarQ96Q27 (Swissvar)
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt [organisation]   Ankyrin_rpt-contain_dom [organisation]   SOCS_C [organisation]  
Related proteins : CluSTrQ96Q27
Domain families : Pfam (Sanger)Ank (PF00023)    Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam00023    pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
DMDM Disease mutations51676
Blocks (Seattle)Q96Q27
Human Protein AtlasENSG00000100628 [gene] [tissue] [antibody] [cell] [cancer]
Peptide AtlasQ96Q27
HPRD05768
IPIIPI00939922   IPI00216028   IPI01016013   IPI01025210   IPI01025320   IPI01024952   IPI01025129   IPI01024720   
Protein Interaction databases
DIP (DOE-UCLA)Q96Q27
IntAct (EBI)Q96Q27
FunCoupENSG00000100628
BioGRIDASB2
InParanoidQ96Q27
Interologous Interaction database Q96Q27
IntegromeDBASB2
STRING (EMBL)ASB2
Ontologies - Pathways
Ontology : AmiGOprotein polyubiquitination  ubiquitin-protein ligase activity  protein binding  signal transduction  Cul5-RING ubiquitin ligase complex  intracellular signal transduction  skeletal muscle cell differentiation  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  myoblast differentiation  
Ontology : EGO-EBIprotein polyubiquitination  ubiquitin-protein ligase activity  protein binding  signal transduction  Cul5-RING ubiquitin ligase complex  intracellular signal transduction  skeletal muscle cell differentiation  protein ubiquitination involved in ubiquitin-dependent protein catabolic process  myoblast differentiation  
Protein Interaction DatabaseASB2
Wikipedia pathwaysASB2
Gene fusion - rearrangments
Polymorphisms : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ASB2
snp3D : Map Gene to Disease51676
SNP (GeneSNP Utah)ASB2
SNP : HGBaseASB2
Genetic variants : HAPMAPASB2
Exome VariantASB2
1000_GenomesASB2 
ICGC programENSG00000100628 
Somatic Mutations in Cancer : COSMICASB2 
CONAN: Copy Number AnalysisASB2 
Mutations and Diseases : HGMDASB2
Genomic VariantsASB2  ASB2 [DGVbeta]
dbVarASB2
ClinVarASB2
Pred. of missensesPolyPhen-2  SIFT(SG)  SIFT(JCVI)  Align-GVGD  MutAssessor  Mutanalyser  
Pred. splicesGeneSplicer  Human Splicing Finder  MaxEntScan  
Diseases
OMIM605759   
MedgenASB2
GENETestsASB2
Disease Genetic AssociationASB2
Huge Navigator ASB2 [HugePedia]  ASB2 [HugeCancerGEM]
General knowledge
Homologs : HomoloGeneASB2
Homology/Alignments : Family Browser (UCSC)ASB2
Phylogenetic Trees/Animal Genes : TreeFamASB2
Chemical/Protein Interactions : CTD51676
Chemical/Pharm GKB GenePA25030
Clinical trialASB2
Cancer Resource (Charite)ENSG00000100628
Other databases
Probes
Litterature
PubMed27 Pubmed reference(s) in Entrez
CoreMineASB2
iHOPASB2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated12-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri Jul 11 16:45:00 CEST 2014

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