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ASB3 (ankyrin repeat and SOCS box containing 3)

Identity

Alias_namesankyrin repeat and SOCS box-containing 3
Alias_symbol (synonym)ASB-3
Other alias
HGNC (Hugo) ASB3
LocusID (NCBI) 51130
Atlas_Id 60559
Location 2p16.2  [Link to chromosome band 2p16]
Location_base_pair Starts at 53669980 and ends at 53786848 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ANKS1B (12q23.1) / ASB3 (2p16.2)ASB3 (2p16.2) / MTF1 (1p34.3)TEC (4p12) / ASB3 (2p16.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB3   16013
Cards
Entrez_Gene (NCBI)ASB3  51130  ankyrin repeat and SOCS box containing 3
AliasesASB-3
GeneCards (Weizmann)ASB3
Ensembl hg19 (Hinxton)ENSG00000115239 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000115239 [Gene_View]  chr2:53669980-53786848 [Contig_View]  ASB3 [Vega]
ICGC DataPortalENSG00000115239
TCGA cBioPortalASB3
AceView (NCBI)ASB3
Genatlas (Paris)ASB3
WikiGenes51130
SOURCE (Princeton)ASB3
Genetics Home Reference (NIH)ASB3
Genomic and cartography
GoldenPath hg38 (UCSC)ASB3  -     chr2:53669980-53786848 -  2p16.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB3  -     2p16.2   [Description]    (hg19-Feb_2009)
EnsemblASB3 - 2p16.2 [CytoView hg19]  ASB3 - 2p16.2 [CytoView hg38]
Mapping of homologs : NCBIASB3 [Mapview hg19]  ASB3 [Mapview hg38]
OMIM605760   
Gene and transcription
Genbank (Entrez)AB209795 AF156778 AK000985 AK001283 AK056069
RefSeq transcript (Entrez)NM_001201965 NM_016115 NM_145863
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB3
Cluster EST : UnigeneHs.40763 [ NCBI ]
CGAP (NCI)Hs.40763
Alternative Splicing GalleryENSG00000115239
Gene ExpressionASB3 [ NCBI-GEO ]   ASB3 [ EBI - ARRAY_EXPRESS ]   ASB3 [ SEEK ]   ASB3 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51130
GTEX Portal (Tissue expression)ASB3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y575   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y575  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y575
Splice isoforms : SwissVarQ9Y575
PhosPhoSitePlusQ9Y575
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    Ank_3 (PF13606)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam13606    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB3
DMDM Disease mutations51130
Blocks (Seattle)ASB3
SuperfamilyQ9Y575
Human Protein AtlasENSG00000115239
Peptide AtlasQ9Y575
HPRD05769
IPIIPI00871755   IPI00921607   IPI00157920   IPI00893100   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y575
IntAct (EBI)Q9Y575
FunCoupENSG00000115239
BioGRIDASB3
STRING (EMBL)ASB3
ZODIACASB3
Ontologies - Pathways
QuickGOQ9Y575
Ontology : AmiGOubiquitin ligase complex  ubiquitin-protein transferase activity  protein binding  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
Ontology : EGO-EBIubiquitin ligase complex  ubiquitin-protein transferase activity  protein binding  nucleus  cytoplasm  protein ubiquitination  ubiquitin protein ligase binding  intracellular signal transduction  
NDEx NetworkASB3
Atlas of Cancer Signalling NetworkASB3
Wikipedia pathwaysASB3
Orthology - Evolution
OrthoDB51130
GeneTree (enSembl)ENSG00000115239
Phylogenetic Trees/Animal Genes : TreeFamASB3
HOVERGENQ9Y575
HOGENOMQ9Y575
Homologs : HomoloGeneASB3
Homology/Alignments : Family Browser (UCSC)ASB3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB3
dbVarASB3
ClinVarASB3
1000_GenomesASB3 
Exome Variant ServerASB3
ExAC (Exome Aggregation Consortium)ASB3 (select the gene name)
Genetic variants : HAPMAP51130
Genomic Variants (DGV)ASB3 [DGVbeta]
DECIPHERASB3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB3 
Mutations
ICGC Data PortalASB3 
TCGA Data PortalASB3 
Broad Tumor PortalASB3
OASIS PortalASB3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB3
DgiDB (Drug Gene Interaction Database)ASB3
DoCM (Curated mutations)ASB3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB3 (select a term)
intoGenASB3
Cancer3DASB3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605760   
Orphanet
MedgenASB3
Genetic Testing Registry ASB3
NextProtQ9Y575 [Medical]
TSGene51130
GENETestsASB3
Target ValidationASB3
Huge Navigator ASB3 [HugePedia]
snp3D : Map Gene to Disease51130
BioCentury BCIQASB3
ClinGenASB3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51130
Chemical/Pharm GKB GenePA25031
Clinical trialASB3
Miscellaneous
canSAR (ICR)ASB3 (select the gene name)
Probes
Litterature
PubMed20 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB3
EVEXASB3
GoPubMedASB3
iHOPASB3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:53 CEST 2017

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