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ASB4 (ankyrin repeat and SOCS box containing 4)

Identity

Alias_namesankyrin repeat and SOCS box-containing 4
Alias_symbol (synonym)ASB-4
Other alias
HGNC (Hugo) ASB4
LocusID (NCBI) 51666
Atlas_Id 60560
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 95485901 and ends at 95540231 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAI14 (5p13.2) / ASB4 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB4   16009
Cards
Entrez_Gene (NCBI)ASB4  51666  ankyrin repeat and SOCS box containing 4
AliasesASB-4
GeneCards (Weizmann)ASB4
Ensembl hg19 (Hinxton)ENSG00000005981 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005981 [Gene_View]  chr7:95485901-95540231 [Contig_View]  ASB4 [Vega]
ICGC DataPortalENSG00000005981
TCGA cBioPortalASB4
AceView (NCBI)ASB4
Genatlas (Paris)ASB4
WikiGenes51666
SOURCE (Princeton)ASB4
Genetics Home Reference (NIH)ASB4
Genomic and cartography
GoldenPath hg38 (UCSC)ASB4  -     chr7:95485901-95540231 +  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB4  -     7q21.3   [Description]    (hg19-Feb_2009)
EnsemblASB4 - 7q21.3 [CytoView hg19]  ASB4 - 7q21.3 [CytoView hg38]
Mapping of homologs : NCBIASB4 [Mapview hg19]  ASB4 [Mapview hg38]
OMIM605761   
Gene and transcription
Genbank (Entrez)AF156779 AK096449 BC025024 BC111594 BC113479
RefSeq transcript (Entrez)NM_016116 NM_145872
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB4
Cluster EST : UnigeneHs.737518 [ NCBI ]
CGAP (NCI)Hs.737518
Alternative Splicing GalleryENSG00000005981
Gene ExpressionASB4 [ NCBI-GEO ]   ASB4 [ EBI - ARRAY_EXPRESS ]   ASB4 [ SEEK ]   ASB4 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB4 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51666
GTEX Portal (Tissue expression)ASB4
Human Protein AtlasENSG00000005981-ASB4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y574   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y574  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y574
Splice isoforms : SwissVarQ9Y574
PhosPhoSitePlusQ9Y574
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB4
DMDM Disease mutations51666
Blocks (Seattle)ASB4
SuperfamilyQ9Y574
Human Protein Atlas [tissue]ENSG00000005981-ASB4 [tissue]
Peptide AtlasQ9Y574
HPRD05770
IPIIPI00007636   IPI00022499   
Protein Interaction databases
DIP (DOE-UCLA)Q9Y574
IntAct (EBI)Q9Y574
FunCoupENSG00000005981
BioGRIDASB4
STRING (EMBL)ASB4
ZODIACASB4
Ontologies - Pathways
QuickGOQ9Y574
Ontology : AmiGOubiquitin-protein transferase activity  nucleus  cytoplasm  Cul2-RING ubiquitin ligase complex  Cul5-RING ubiquitin ligase complex  ubiquitin protein ligase binding  intracellular signal transduction  protein autoubiquitination  ubiquitin protein ligase activity  positive regulation of vasculogenesis  
Ontology : EGO-EBIubiquitin-protein transferase activity  nucleus  cytoplasm  Cul2-RING ubiquitin ligase complex  Cul5-RING ubiquitin ligase complex  ubiquitin protein ligase binding  intracellular signal transduction  protein autoubiquitination  ubiquitin protein ligase activity  positive regulation of vasculogenesis  
NDEx NetworkASB4
Atlas of Cancer Signalling NetworkASB4
Wikipedia pathwaysASB4
Orthology - Evolution
OrthoDB51666
GeneTree (enSembl)ENSG00000005981
Phylogenetic Trees/Animal Genes : TreeFamASB4
HOVERGENQ9Y574
HOGENOMQ9Y574
Homologs : HomoloGeneASB4
Homology/Alignments : Family Browser (UCSC)ASB4
Gene fusions - Rearrangements
Tumor Fusion PortalASB4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB4
dbVarASB4
ClinVarASB4
1000_GenomesASB4 
Exome Variant ServerASB4
ExAC (Exome Aggregation Consortium)ENSG00000005981
GNOMAD BrowserENSG00000005981
Genetic variants : HAPMAP51666
Genomic Variants (DGV)ASB4 [DGVbeta]
DECIPHERASB4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB4 
Mutations
ICGC Data PortalASB4 
TCGA Data PortalASB4 
Broad Tumor PortalASB4
OASIS PortalASB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB4  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB4
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB4
DgiDB (Drug Gene Interaction Database)ASB4
DoCM (Curated mutations)ASB4 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB4 (select a term)
intoGenASB4
Cancer3DASB4(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605761   
Orphanet
DisGeNETASB4
MedgenASB4
Genetic Testing Registry ASB4
NextProtQ9Y574 [Medical]
TSGene51666
GENETestsASB4
Target ValidationASB4
Huge Navigator ASB4 [HugePedia]
snp3D : Map Gene to Disease51666
BioCentury BCIQASB4
ClinGenASB4
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51666
Chemical/Pharm GKB GenePA25032
Clinical trialASB4
Miscellaneous
canSAR (ICR)ASB4 (select the gene name)
Probes
Litterature
PubMed14 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB4
EVEXASB4
GoPubMedASB4
iHOPASB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Nov 21 13:15:43 CET 2017

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