Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASB4 (ankyrin repeat and SOCS box containing 4)

Identity

Alias (NCBI)ASB-4
HGNC (Hugo) ASB4
HGNC Alias symbASB-4
HGNC Previous nameankyrin repeat and SOCS box-containing 4
LocusID (NCBI) 51666
Atlas_Id 58176
Location 7q21.3  [Link to chromosome band 7q21]
Location_base_pair Starts at 95485901 and ends at 95528801 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
RAI14 (5p13.2) / ASB4 (7q21.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 



External links

 

Nomenclature
HGNC (Hugo)ASB4   16009
Cards
Entrez_Gene (NCBI)ASB4    ankyrin repeat and SOCS box containing 4
AliasesASB-4
GeneCards (Weizmann)ASB4
Ensembl hg19 (Hinxton)ENSG00000005981 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000005981 [Gene_View]  ENSG00000005981 [Sequence]  chr7:95485901-95528801 [Contig_View]  ASB4 [Vega]
ICGC DataPortalENSG00000005981
TCGA cBioPortalASB4
AceView (NCBI)ASB4
Genatlas (Paris)ASB4
SOURCE (Princeton)ASB4
Genetics Home Reference (NIH)ASB4
Genomic and cartography
GoldenPath hg38 (UCSC)ASB4  -     chr7:95485901-95528801 +  7q21.3   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB4  -     7q21.3   [Description]    (hg19-Feb_2009)
GoldenPathASB4 - 7q21.3 [CytoView hg19]  ASB4 - 7q21.3 [CytoView hg38]
ImmunoBaseENSG00000005981
Genome Data Viewer NCBIASB4 [Mapview hg19]  
OMIM605761   
Gene and transcription
Genbank (Entrez)AF156779 AK096449 BC025024 BC113479 BC113481
RefSeq transcript (Entrez)NM_016116 NM_145872
Consensus coding sequences : CCDS (NCBI)ASB4
Gene ExpressionASB4 [ NCBI-GEO ]   ASB4 [ EBI - ARRAY_EXPRESS ]   ASB4 [ SEEK ]   ASB4 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB4 [ Firebrowse - Broad ]
GenevisibleExpression of ASB4 in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51666
GTEX Portal (Tissue expression)ASB4
Human Protein AtlasENSG00000005981-ASB4 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9Y574   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9Y574  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9Y574
PhosPhoSitePlusQ9Y574
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    Ankyrin_rpt-contain_sf    SOCS_box    SOCS_box-like_dom_sf   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB4
SuperfamilyQ9Y574
AlphaFold pdb e-kbQ9Y574   
Human Protein Atlas [tissue]ENSG00000005981-ASB4 [tissue]
Protein Interaction databases
DIP (DOE-UCLA)Q9Y574
IntAct (EBI)Q9Y574
BioGRIDASB4
STRING (EMBL)ASB4
ZODIACASB4
Ontologies - Pathways
QuickGOQ9Y574
Ontology : AmiGOubiquitin-protein transferase activity  cytosol  Cul2-RING ubiquitin ligase complex  Cul5-RING ubiquitin ligase complex  ubiquitin protein ligase binding  intracellular signal transduction  post-translational protein modification  protein autoubiquitination  ubiquitin protein ligase activity  positive regulation of vasculogenesis  
Ontology : EGO-EBIubiquitin-protein transferase activity  cytosol  Cul2-RING ubiquitin ligase complex  Cul5-RING ubiquitin ligase complex  ubiquitin protein ligase binding  intracellular signal transduction  post-translational protein modification  protein autoubiquitination  ubiquitin protein ligase activity  positive regulation of vasculogenesis  
NDEx NetworkASB4
Atlas of Cancer Signalling NetworkASB4
Wikipedia pathwaysASB4
Orthology - Evolution
OrthoDB51666
GeneTree (enSembl)ENSG00000005981
Phylogenetic Trees/Animal Genes : TreeFamASB4
Homologs : HomoloGeneASB4
Homology/Alignments : Family Browser (UCSC)ASB4
Gene fusions - Rearrangements
Fusion : QuiverASB4
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB4 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB4
dbVarASB4
ClinVarASB4
MonarchASB4
1000_GenomesASB4 
Exome Variant ServerASB4
GNOMAD BrowserENSG00000005981
Varsome BrowserASB4
ACMGASB4 variants
VarityQ9Y574
Genomic Variants (DGV)ASB4 [DGVbeta]
DECIPHERASB4 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB4 
Mutations
ICGC Data PortalASB4 
TCGA Data PortalASB4 
Broad Tumor PortalASB4
OASIS PortalASB4 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB4  [overview]  [genome browser]  [tissue]  [distribution]  
Somatic Mutations in Cancer : COSMIC3DASB4
Mutations and Diseases : HGMDASB4
LOVD (Leiden Open Variation Database)[gene] [transcripts] [variants]
BioMutaASB4
DgiDB (Drug Gene Interaction Database)ASB4
DoCM (Curated mutations)ASB4
CIViC (Clinical Interpretations of Variants in Cancer)ASB4
Cancer3DASB4
Impact of mutations[PolyPhen2] [Provean] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM605761   
Orphanet
DisGeNETASB4
MedgenASB4
Genetic Testing Registry ASB4
NextProtQ9Y574 [Medical]
GENETestsASB4
Target ValidationASB4
Huge Navigator ASB4 [HugePedia]
ClinGenASB4
Clinical trials, drugs, therapy
MyCancerGenomeASB4
Protein Interactions : CTDASB4
PharosQ9Y574
Clinical trialASB4
Miscellaneous
canSAR (ICR)ASB4
HarmonizomeASB4
DataMed IndexASB4
Probes
Litterature
PubMed18 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
EVEXASB4
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Mon Oct 4 15:00:17 CEST 2021

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.