Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASB5 (ankyrin repeat and SOCS box containing 5)

Identity

Alias_namesankyrin repeat and SOCS box-containing 5
Other aliasASB-5
HGNC (Hugo) ASB5
LocusID (NCBI) 140458
Atlas_Id 60561
Location 4q34.2  [Link to chromosome band 4q34]
Location_base_pair Starts at 176213675 and ends at 176269222 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2017)
Data from Atlas, Mitelman, Cosmic Fusion, Fusion Cancer, TCGA fusion databases with official HUGO symbols (see references in chromosomal bands)
ASB5 (4q34.2) / MGP (12p12.3)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

ĽA HREF=http://pbil.univ-lyon1.fr/cgi-bin/acnuc-ac2tree?query=Q8WWX0&db=HOGENOM TARGET=HoGenom>Q8WWX0
Nomenclature
HGNC (Hugo)ASB5   17180
Cards
Entrez_Gene (NCBI)ASB5  140458  ankyrin repeat and SOCS box containing 5
AliasesASB-5
GeneCards (Weizmann)ASB5
Ensembl hg19 (Hinxton)ENSG00000164122 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000164122 [Gene_View]  chr4:176213675-176269222 [Contig_View]  ASB5 [Vega]
ICGC DataPortalENSG00000164122
TCGA cBioPortalASB5
AceView (NCBI)ASB5
Genatlas (Paris)ASB5
WikiGenes140458
SOURCE (Princeton)ASB5
Genetics Home Reference (NIH)ASB5
Genomic and cartography
GoldenPath hg38 (UCSC)ASB5  -     chr4:176213675-176269222 -  4q34.2   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB5  -     4q34.2   [Description]    (hg19-Feb_2009)
EnsemblASB5 - 4q34.2 [CytoView hg19]  ASB5 - 4q34.2 [CytoView hg38]
Mapping of homologs : NCBIASB5 [Mapview hg19]  ASB5 [Mapview hg38]
OMIM615050   
Gene and transcription
Genbank (Entrez)AK096441 AK098693 AY057053 BC065710 BX647857
RefSeq transcript (Entrez)NM_080874
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB5
Cluster EST : UnigeneHs.591712 [ NCBI ]
CGAP (NCI)Hs.591712
Alternative Splicing GalleryENSG00000164122
Gene ExpressionASB5 [ NCBI-GEO ]   ASB5 [ EBI - ARRAY_EXPRESS ]   ASB5 [ SEEK ]   ASB5 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevestigatorExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140458
GTEX Portal (Tissue expression)ASB5
Human Protein AtlasENSG00000164122-ASB5 [pathology]   [cell]   [tissue]
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ8WWX0   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ8WWX0  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ8WWX0
Splice isoforms : SwissVarQ8WWX0
PhosPhoSitePlusQ8WWX0
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB5
DMDM Disease mutations140458
Blocks (Seattle)ASB5
SuperfamilyQ8WWX0
Human Protein Atlas [tissue]ENSG00000164122-ASB5 [tissue]
Peptide AtlasQ8WWX0
HPRD10672
IPIIPI00103460   IPI00966481   IPI00966720   
Protein Interaction databases
DIP (DOE-UCLA)Q8WWX0
IntAct (EBI)Q8WWX0
FunCoupENSG00000164122
BioGRIDASB5
STRING (EMBL)ASB5
ZODIACASB5
Ontologies - Pathways
QuickGOQ8WWX0
Ontology : AmiGOintracellular  protein ubiquitination  intracellular signal transduction  
Ontology : EGO-EBIintracellular  protein ubiquitination  intracellular signal transduction  
NDEx NetworkASB5
Atlas of Cancer Signalling NetworkASB5
Wikipedia pathwaysASB5
Orthology - Evolution
OrthoDB140458
GeneTree (enSembl)ENSG00000164122
Phylogenetic Trees/Animal Genes : TreeFamASB5
HOVERGENQ8WWX0
HOGENOM
Homologs : HomoloGeneASB5
Homology/Alignments : Family Browser (UCSC)ASB5
Gene fusions - Rearrangements
Fusion: Tumor Portal ASB5
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB5
dbVarASB5
ClinVarASB5
1000_GenomesASB5 
Exome Variant ServerASB5
ExAC (Exome Aggregation Consortium)ENSG00000164122
GNOMAD BrowserENSG00000164122
Genetic variants : HAPMAP140458
Genomic Variants (DGV)ASB5 [DGVbeta]
DECIPHERASB5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB5 
Mutations
ICGC Data PortalASB5 
TCGA Data PortalASB5 
Broad Tumor PortalASB5
OASIS PortalASB5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB5
DgiDB (Drug Gene Interaction Database)ASB5
DoCM (Curated mutations)ASB5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB5 (select a term)
intoGenASB5
Cancer3DASB5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615050   
Orphanet
MedgenASB5
Genetic Testing Registry ASB5
NextProtQ8WWX0 [Medical]
TSGene140458
GENETestsASB5
Target ValidationASB5
Huge Navigator ASB5 [HugePedia]
snp3D : Map Gene to Disease140458
BioCentury BCIQASB5
ClinGenASB5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140458
Chemical/Pharm GKB GenePA25033
Clinical trialASB5
Miscellaneous
canSAR (ICR)ASB5 (select the gene name)
Probes
Litterature
PubMed7 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB5
EVEXASB5
GoPubMedASB5
iHOPASB5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Thu Nov 9 11:38:27 CET 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.