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ASB6 (ankyrin repeat and SOCS box containing 6)

Identity

Alias_namesankyrin repeat and SOCS box-containing 6
Other alias-
HGNC (Hugo) ASB6
LocusID (NCBI) 140459
Atlas_Id 60562
Location 9q34.11  [Link to chromosome band 9q34]
Location_base_pair Starts at 129634604 and ends at 129642169 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASB6 (9q34.11) / TMEM120A (7q11.23)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB6   17181
Cards
Entrez_Gene (NCBI)ASB6  140459  ankyrin repeat and SOCS box containing 6
Aliases
GeneCards (Weizmann)ASB6
Ensembl hg19 (Hinxton)ENSG00000148331 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000148331 [Gene_View]  chr9:129634604-129642169 [Contig_View]  ASB6 [Vega]
ICGC DataPortalENSG00000148331
TCGA cBioPortalASB6
AceView (NCBI)ASB6
Genatlas (Paris)ASB6
WikiGenes140459
SOURCE (Princeton)ASB6
Genetics Home Reference (NIH)ASB6
Genomic and cartography
GoldenPath hg38 (UCSC)ASB6  -     chr9:129634604-129642169 -  9q34.11   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASB6  -     9q34.11   [Description]    (hg19-Feb_2009)
EnsemblASB6 - 9q34.11 [CytoView hg19]  ASB6 - 9q34.11 [CytoView hg38]
Mapping of homologs : NCBIASB6 [Mapview hg19]  ASB6 [Mapview hg38]
OMIM615051   
Gene and transcription
Genbank (Entrez)AK000555 AK023004 AK093539 AK225618 AK292807
RefSeq transcript (Entrez)NM_001202403 NM_017873 NM_177999
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASB6
Cluster EST : UnigeneHs.125037 [ NCBI ]
CGAP (NCI)Hs.125037
Alternative Splicing GalleryENSG00000148331
Gene ExpressionASB6 [ NCBI-GEO ]   ASB6 [ EBI - ARRAY_EXPRESS ]   ASB6 [ SEEK ]   ASB6 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB6 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140459
GTEX Portal (Tissue expression)ASB6
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NWX5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NWX5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NWX5
Splice isoforms : SwissVarQ9NWX5
PhosPhoSitePlusQ9NWX5
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_box   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS (SM00253)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB6
DMDM Disease mutations140459
Blocks (Seattle)ASB6
SuperfamilyQ9NWX5
Human Protein AtlasENSG00000148331
Peptide AtlasQ9NWX5
HPRD10673
IPIIPI00016560   IPI00910485   IPI00981797   IPI00031307   
Protein Interaction databases
DIP (DOE-UCLA)Q9NWX5
IntAct (EBI)Q9NWX5
FunCoupENSG00000148331
BioGRIDASB6
STRING (EMBL)ASB6
ZODIACASB6
Ontologies - Pathways
QuickGOQ9NWX5
Ontology : AmiGOprotein binding  cytoplasm  protein ubiquitination  intracellular signal transduction  
Ontology : EGO-EBIprotein binding  cytoplasm  protein ubiquitination  intracellular signal transduction  
NDEx NetworkASB6
Atlas of Cancer Signalling NetworkASB6
Wikipedia pathwaysASB6
Orthology - Evolution
OrthoDB140459
GeneTree (enSembl)ENSG00000148331
Phylogenetic Trees/Animal Genes : TreeFamASB6
HOVERGENQ9NWX5
HOGENOMQ9NWX5
Homologs : HomoloGeneASB6
Homology/Alignments : Family Browser (UCSC)ASB6
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB6 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB6
dbVarASB6
ClinVarASB6
1000_GenomesASB6 
Exome Variant ServerASB6
ExAC (Exome Aggregation Consortium)ASB6 (select the gene name)
Genetic variants : HAPMAP140459
Genomic Variants (DGV)ASB6 [DGVbeta]
DECIPHERASB6 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASB6 
Mutations
ICGC Data PortalASB6 
TCGA Data PortalASB6 
Broad Tumor PortalASB6
OASIS PortalASB6 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB6  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB6
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB6
DgiDB (Drug Gene Interaction Database)ASB6
DoCM (Curated mutations)ASB6 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB6 (select a term)
intoGenASB6
Cancer3DASB6(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615051   
Orphanet
MedgenASB6
Genetic Testing Registry ASB6
NextProtQ9NWX5 [Medical]
TSGene140459
GENETestsASB6
Target ValidationASB6
Huge Navigator ASB6 [HugePedia]
snp3D : Map Gene to Disease140459
BioCentury BCIQASB6
ClinGenASB6
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140459
Chemical/Pharm GKB GenePA25034
Clinical trialASB6
Miscellaneous
canSAR (ICR)ASB6 (select the gene name)
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB6
EVEXASB6
GoPubMedASB6
iHOPASB6
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:38:59 CEST 2017

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