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ASB8 (ankyrin repeat and SOCS box containing 8)

Identity

Alias_namesankyrin repeat and SOCS box-containing 8
Alias_symbol (synonym)MGC5540
FLJ21255
Other aliasPP14212
HGNC (Hugo) ASB8
LocusID (NCBI) 140461
Atlas_Id 60564
Location 12q13.11  [Link to chromosome band 12q13]
Location_base_pair Starts at 48541572 and ends at 48551377 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ASB8 (12q13.11) / NELL2 (12q12)ASB8 (12q13.11) / ZDBF2 (2q33.3)UFM1 (13q13.3) / ASB8 (12q13.11)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASB8   17183
Cards
Entrez_Gene (NCBI)ASB8  140461  ankyrin repeat and SOCS box containing 8
AliasesPP14212
GeneCards (Weizmann)ASB8
Ensembl hg19 (Hinxton)ENSG00000177981 [Gene_View]  chr12:48541572-48551377 [Contig_View]  ASB8 [Vega]
Ensembl hg38 (Hinxton)ENSG00000177981 [Gene_View]  chr12:48541572-48551377 [Contig_View]  ASB8 [Vega]
ICGC DataPortalENSG00000177981
TCGA cBioPortalASB8
AceView (NCBI)ASB8
Genatlas (Paris)ASB8
WikiGenes140461
SOURCE (Princeton)ASB8
Genetics Home Reference (NIH)ASB8
Genomic and cartography
GoldenPath hg19 (UCSC)ASB8  -     chr12:48541572-48551377 -  12q13.11   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASB8  -     12q13.11   [Description]    (hg38-Dec_2013)
EnsemblASB8 - 12q13.11 [CytoView hg19]  ASB8 - 12q13.11 [CytoView hg38]
Mapping of homologs : NCBIASB8 [Mapview hg19]  ASB8 [Mapview hg38]
OMIM615053   
Gene and transcription
Genbank (Entrez)AF464877 AK024908 AK125596 AK289957 AK297013
RefSeq transcript (Entrez)NM_024095
RefSeq genomic (Entrez)NC_000012 NC_018923 NT_029419 NW_004929384
Consensus coding sequences : CCDS (NCBI)ASB8
Cluster EST : UnigeneHs.432699 [ NCBI ]
CGAP (NCI)Hs.432699
Alternative Splicing GalleryENSG00000177981
Gene ExpressionASB8 [ NCBI-GEO ]   ASB8 [ EBI - ARRAY_EXPRESS ]   ASB8 [ SEEK ]   ASB8 [ MEM ]
Gene Expression Viewer (FireBrowse)ASB8 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)140461
GTEX Portal (Tissue expression)ASB8
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9H765   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9H765  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9H765
Splice isoforms : SwissVarQ9H765
PhosPhoSitePlusQ9H765
Domaine pattern : Prosite (Expaxy)ANK_REP_REGION (PS50297)    ANK_REPEAT (PS50088)    SOCS (PS50225)   
Domains : Interpro (EBI)Ankyrin_rpt    Ankyrin_rpt-contain_dom    SOCS_C   
Domain families : Pfam (Sanger)Ank_2 (PF12796)    SOCS_box (PF07525)   
Domain families : Pfam (NCBI)pfam12796    pfam07525   
Domain families : Smart (EMBL)ANK (SM00248)  SOCS_box (SM00969)  
Conserved Domain (NCBI)ASB8
DMDM Disease mutations140461
Blocks (Seattle)ASB8
SuperfamilyQ9H765
Human Protein AtlasENSG00000177981
Peptide AtlasQ9H765
HPRD10675
IPIIPI00012196   IPI00910429   IPI00445671   IPI01015695   IPI01013231   IPI01015610   IPI01013528   IPI00793569   IPI01011365   IPI00795201   
Protein Interaction databases
DIP (DOE-UCLA)Q9H765
IntAct (EBI)Q9H765
FunCoupENSG00000177981
BioGRIDASB8
STRING (EMBL)ASB8
ZODIACASB8
Ontologies - Pathways
QuickGOQ9H765
Ontology : AmiGOcytoplasm  protein ubiquitination  intracellular signal transduction  
Ontology : EGO-EBIcytoplasm  protein ubiquitination  intracellular signal transduction  
NDEx NetworkASB8
Atlas of Cancer Signalling NetworkASB8
Wikipedia pathwaysASB8
Orthology - Evolution
OrthoDB140461
GeneTree (enSembl)ENSG00000177981
Phylogenetic Trees/Animal Genes : TreeFamASB8
HOVERGENQ9H765
HOGENOMQ9H765
Homologs : HomoloGeneASB8
Homology/Alignments : Family Browser (UCSC)ASB8
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASB8 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASB8
dbVarASB8
ClinVarASB8
1000_GenomesASB8 
Exome Variant ServerASB8
ExAC (Exome Aggregation Consortium)ASB8 (select the gene name)
Genetic variants : HAPMAP140461
Genomic Variants (DGV)ASB8 [DGVbeta]
DECIPHER (Syndromes)12:48541572-48551377  ENSG00000177981
CONAN: Copy Number AnalysisASB8 
Mutations
ICGC Data PortalASB8 
TCGA Data PortalASB8 
Broad Tumor PortalASB8
OASIS PortalASB8 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASB8  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASB8
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASB8
DgiDB (Drug Gene Interaction Database)ASB8
DoCM (Curated mutations)ASB8 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASB8 (select a term)
intoGenASB8
Cancer3DASB8(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM615053   
Orphanet
MedgenASB8
Genetic Testing Registry ASB8
NextProtQ9H765 [Medical]
TSGene140461
GENETestsASB8
Huge Navigator ASB8 [HugePedia]
snp3D : Map Gene to Disease140461
BioCentury BCIQASB8
ClinGenASB8
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD140461
Chemical/Pharm GKB GenePA25036
Clinical trialASB8
Miscellaneous
canSAR (ICR)ASB8 (select the gene name)
Probes
Litterature
PubMed13 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASB8
EVEXASB8
GoPubMedASB8
iHOPASB8
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Tue Mar 14 11:55:11 CET 2017

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