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ASCL5 (achaete-scute family bHLH transcription factor 5)

Identity

Alias_namesachaete-scute complex homolog 5 (Drosophila)
Alias_symbol (synonym)bHLHa47
Other alias
HGNC (Hugo) ASCL5
LocusID (NCBI) 647219
Atlas_Id 60569
Location 1q32.1  [Link to chromosome band 1q32]
Location_base_pair Starts at 201113953 and ends at 201115372 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASCL5   33169
Cards
Entrez_Gene (NCBI)ASCL5  647219  achaete-scute family bHLH transcription factor 5
AliasesbHLHa47
GeneCards (Weizmann)ASCL5
Ensembl hg19 (Hinxton)ENSG00000232237 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000232237 [Gene_View]  chr1:201113953-201115372 [Contig_View]  ASCL5 [Vega]
ICGC DataPortalENSG00000232237
TCGA cBioPortalASCL5
AceView (NCBI)ASCL5
Genatlas (Paris)ASCL5
WikiGenes647219
SOURCE (Princeton)ASCL5
Genetics Home Reference (NIH)ASCL5
Genomic and cartography
GoldenPath hg38 (UCSC)ASCL5  -     chr1:201113953-201115372 -  1q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASCL5  -     1q32.1   [Description]    (hg19-Feb_2009)
EnsemblASCL5 - 1q32.1 [CytoView hg19]  ASCL5 - 1q32.1 [CytoView hg38]
Mapping of homologs : NCBIASCL5 [Mapview hg19]  ASCL5 [Mapview hg38]
Gene and transcription
Genbank (Entrez)AI274185 AI791516
RefSeq transcript (Entrez)NM_001270601
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASCL5
Cluster EST : UnigeneHs.721460 [ NCBI ]
CGAP (NCI)Hs.721460
Alternative Splicing GalleryENSG00000232237
Gene ExpressionASCL5 [ NCBI-GEO ]   ASCL5 [ EBI - ARRAY_EXPRESS ]   ASCL5 [ SEEK ]   ASCL5 [ MEM ]
Gene Expression Viewer (FireBrowse)ASCL5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)647219
GTEX Portal (Tissue expression)ASCL5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ7RTU5   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ7RTU5  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ7RTU5
Splice isoforms : SwissVarQ7RTU5
PhosPhoSitePlusQ7RTU5
Domaine pattern : Prosite (Expaxy)BHLH (PS50888)   
Domains : Interpro (EBI)Achaete-scute-rel    bHLH_dom   
Domain families : Pfam (Sanger)HLH (PF00010)   
Domain families : Pfam (NCBI)pfam00010   
Domain families : Smart (EMBL)HLH (SM00353)  
Conserved Domain (NCBI)ASCL5
DMDM Disease mutations647219
Blocks (Seattle)ASCL5
SuperfamilyQ7RTU5
Human Protein AtlasENSG00000232237
Peptide AtlasQ7RTU5
IPIIPI00394928   
Protein Interaction databases
DIP (DOE-UCLA)Q7RTU5
IntAct (EBI)Q7RTU5
FunCoupENSG00000232237
BioGRIDASCL5
STRING (EMBL)ASCL5
ZODIACASCL5
Ontologies - Pathways
QuickGOQ7RTU5
Ontology : AmiGORNA polymerase II regulatory region sequence-specific DNA binding  molecular_function  transcription factor activity, sequence-specific DNA binding  cellular_component  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  biological_process  protein dimerization activity  RNA polymerase II transcription factor complex  
Ontology : EGO-EBIRNA polymerase II regulatory region sequence-specific DNA binding  molecular_function  transcription factor activity, sequence-specific DNA binding  cellular_component  transcription, DNA-templated  regulation of transcription from RNA polymerase II promoter  biological_process  protein dimerization activity  RNA polymerase II transcription factor complex  
NDEx NetworkASCL5
Atlas of Cancer Signalling NetworkASCL5
Wikipedia pathwaysASCL5
Orthology - Evolution
OrthoDB647219
GeneTree (enSembl)ENSG00000232237
Phylogenetic Trees/Animal Genes : TreeFamASCL5
HOVERGENQ7RTU5
HOGENOMQ7RTU5
Homologs : HomoloGeneASCL5
Homology/Alignments : Family Browser (UCSC)ASCL5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASCL5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASCL5
dbVarASCL5
ClinVarASCL5
1000_GenomesASCL5 
Exome Variant ServerASCL5
ExAC (Exome Aggregation Consortium)ASCL5 (select the gene name)
Genetic variants : HAPMAP647219
Genomic Variants (DGV)ASCL5 [DGVbeta]
DECIPHERASCL5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASCL5 
Mutations
ICGC Data PortalASCL5 
TCGA Data PortalASCL5 
Broad Tumor PortalASCL5
OASIS PortalASCL5 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASCL5  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASCL5
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASCL5
DgiDB (Drug Gene Interaction Database)ASCL5
DoCM (Curated mutations)ASCL5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASCL5 (select a term)
intoGenASCL5
Cancer3DASCL5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM
Orphanet
MedgenASCL5
Genetic Testing Registry ASCL5
NextProtQ7RTU5 [Medical]
TSGene647219
GENETestsASCL5
Target ValidationASCL5
Huge Navigator ASCL5 [HugePedia]
snp3D : Map Gene to Disease647219
BioCentury BCIQASCL5
ClinGenASCL5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD647219
Chemical/Pharm GKB GenePA162376905
Clinical trialASCL5
Miscellaneous
canSAR (ICR)ASCL5 (select the gene name)
Probes
Litterature
GeneRIFsGene References Into Functions (Entrez)
CoreMineASCL5
EVEXASCL5
GoPubMedASCL5
iHOPASCL5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Mon Sep 18 13:01:54 CEST 2017

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