Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASF1B (anti-silencing function 1B histone chaperone)

Identity

Alias_namesASF1 anti-silencing function 1 homolog B (S. cerevisiae)
Alias_symbol (synonym)FLJ10604
Other aliasCIA-II
HGNC (Hugo) ASF1B
LocusID (NCBI) 55723
Atlas_Id 43879
Location 19p13.12  [Link to chromosome band 19p13]
Location_base_pair Starts at 14119509 and ends at 14136628 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
SNHG3 (1p35.3) / ASF1B (19p13.12)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASF1B   20996
Cards
Entrez_Gene (NCBI)ASF1B  55723  anti-silencing function 1B histone chaperone
AliasesCIA-II
GeneCards (Weizmann)ASF1B
Ensembl hg19 (Hinxton)ENSG00000105011 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000105011 [Gene_View]  chr19:14119509-14136628 [Contig_View]  ASF1B [Vega]
ICGC DataPortalENSG00000105011
TCGA cBioPortalASF1B
AceView (NCBI)ASF1B
Genatlas (Paris)ASF1B
WikiGenes55723
SOURCE (Princeton)ASF1B
Genetics Home Reference (NIH)ASF1B
Genomic and cartography
GoldenPath hg38 (UCSC)ASF1B  -     chr19:14119509-14136628 -  19p13.12   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASF1B  -     19p13.12   [Description]    (hg19-Feb_2009)
EnsemblASF1B - 19p13.12 [CytoView hg19]  ASF1B - 19p13.12 [CytoView hg38]
Mapping of homologs : NCBIASF1B [Mapview hg19]  ASF1B [Mapview hg38]
OMIM609190   
Gene and transcription
Genbank (Entrez)AB104486 AF279307 AK001288 AK001466 AK223080
RefSeq transcript (Entrez)NM_018154
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASF1B
Cluster EST : UnigeneHs.26516 [ NCBI ]
CGAP (NCI)Hs.26516
Alternative Splicing GalleryENSG00000105011
Gene ExpressionASF1B [ NCBI-GEO ]   ASF1B [ EBI - ARRAY_EXPRESS ]   ASF1B [ SEEK ]   ASF1B [ MEM ]
Gene Expression Viewer (FireBrowse)ASF1B [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)55723
GTEX Portal (Tissue expression)ASF1B
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NVP2   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NVP2  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NVP2
Splice isoforms : SwissVarQ9NVP2
PhosPhoSitePlusQ9NVP2
Domains : Interpro (EBI)ASF1-like   
Domain families : Pfam (Sanger)ASF1_hist_chap (PF04729)   
Domain families : Pfam (NCBI)pfam04729   
Conserved Domain (NCBI)ASF1B
DMDM Disease mutations55723
Blocks (Seattle)ASF1B
PDB (SRS)5BNX    5BO0   
PDB (PDBSum)5BNX    5BO0   
PDB (IMB)5BNX    5BO0   
PDB (RSDB)5BNX    5BO0   
Structural Biology KnowledgeBase5BNX    5BO0   
SCOP (Structural Classification of Proteins)5BNX    5BO0   
CATH (Classification of proteins structures)5BNX    5BO0   
SuperfamilyQ9NVP2
Human Protein AtlasENSG00000105011
Peptide AtlasQ9NVP2
HPRD16460
IPIIPI00041127   
Protein Interaction databases
DIP (DOE-UCLA)Q9NVP2
IntAct (EBI)Q9NVP2
FunCoupENSG00000105011
BioGRIDASF1B
STRING (EMBL)ASF1B
ZODIACASF1B
Ontologies - Pathways
QuickGOQ9NVP2
Ontology : AmiGOnuclear chromatin  protein binding  nucleoplasm  DNA replication-dependent nucleosome assembly  DNA replication-independent nucleosome assembly  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  covalent chromatin modification  cell differentiation  histone binding  protein complex  
Ontology : EGO-EBInuclear chromatin  protein binding  nucleoplasm  DNA replication-dependent nucleosome assembly  DNA replication-independent nucleosome assembly  transcription, DNA-templated  regulation of transcription, DNA-templated  multicellular organism development  spermatogenesis  covalent chromatin modification  cell differentiation  histone binding  protein complex  
NDEx NetworkASF1B
Atlas of Cancer Signalling NetworkASF1B
Wikipedia pathwaysASF1B
Orthology - Evolution
OrthoDB55723
GeneTree (enSembl)ENSG00000105011
Phylogenetic Trees/Animal Genes : TreeFamASF1B
HOVERGENQ9NVP2
HOGENOMQ9NVP2
Homologs : HomoloGeneASF1B
Homology/Alignments : Family Browser (UCSC)ASF1B
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASF1B [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASF1B
dbVarASF1B
ClinVarASF1B
1000_GenomesASF1B 
Exome Variant ServerASF1B
ExAC (Exome Aggregation Consortium)ASF1B (select the gene name)
Genetic variants : HAPMAP55723
Genomic Variants (DGV)ASF1B [DGVbeta]
DECIPHERASF1B [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASF1B 
Mutations
ICGC Data PortalASF1B 
TCGA Data PortalASF1B 
Broad Tumor PortalASF1B
OASIS PortalASF1B [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASF1B  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASF1B
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASF1B
DgiDB (Drug Gene Interaction Database)ASF1B
DoCM (Curated mutations)ASF1B (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASF1B (select a term)
intoGenASF1B
Cancer3DASF1B(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM609190   
Orphanet
MedgenASF1B
Genetic Testing Registry ASF1B
NextProtQ9NVP2 [Medical]
TSGene55723
GENETestsASF1B
Huge Navigator ASF1B [HugePedia]
snp3D : Map Gene to Disease55723
BioCentury BCIQASF1B
ClinGenASF1B
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD55723
Chemical/Pharm GKB GenePA134931112
Clinical trialASF1B
Miscellaneous
canSAR (ICR)ASF1B (select the gene name)
Probes
Litterature
PubMed45 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASF1B
EVEXASF1B
GoPubMedASF1B
iHOPASF1B
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Fri May 19 12:06:53 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.