Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ASGR1 (asialoglycoprotein receptor 1)

Identity

Alias_symbol (synonym)CLEC4H1
Other aliasASGPR
ASGPR1
HL-1
HGNC (Hugo) ASGR1
LocusID (NCBI) 432
Atlas_Id 53789
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7173431 and ends at 7179564 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASGR1 (17p13.1) / ASGR1 (17p13.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASGR1   742
Cards
Entrez_Gene (NCBI)ASGR1  432  asialoglycoprotein receptor 1
AliasesASGPR; ASGPR1; CLEC4H1; HL-1
GeneCards (Weizmann)ASGR1
Ensembl hg19 (Hinxton)ENSG00000141505 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000141505 [Gene_View]  chr17:7173431-7179564 [Contig_View]  ASGR1 [Vega]
ICGC DataPortalENSG00000141505
TCGA cBioPortalASGR1
AceView (NCBI)ASGR1
Genatlas (Paris)ASGR1
WikiGenes432
SOURCE (Princeton)ASGR1
Genetics Home Reference (NIH)ASGR1
Genomic and cartography
GoldenPath hg38 (UCSC)ASGR1  -     chr17:7173431-7179564 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASGR1  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblASGR1 - 17p13.1 [CytoView hg19]  ASGR1 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIASGR1 [Mapview hg19]  ASGR1 [Mapview hg38]
OMIM108360   
Gene and transcription
Genbank (Entrez)AB070933 AK124286 AK308375 AK308677 BC032130
RefSeq transcript (Entrez)NM_001197216 NM_001671
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASGR1
Cluster EST : UnigeneHs.731669 [ NCBI ]
CGAP (NCI)Hs.731669
Alternative Splicing GalleryENSG00000141505
Gene ExpressionASGR1 [ NCBI-GEO ]   ASGR1 [ EBI - ARRAY_EXPRESS ]   ASGR1 [ SEEK ]   ASGR1 [ MEM ]
Gene Expression Viewer (FireBrowse)ASGR1 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)432
GTEX Portal (Tissue expression)ASGR1
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07306   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07306  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07306
Splice isoforms : SwissVarP07306
PhosPhoSitePlusP07306
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CD209-like_CTLD    CTDL_fold    Lectin_N   
Domain families : Pfam (Sanger)Lectin_C (PF00059)    Lectin_N (PF03954)   
Domain families : Pfam (NCBI)pfam00059    pfam03954   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)ASGR1
DMDM Disease mutations432
Blocks (Seattle)ASGR1
PDB (SRS)1DV8   
PDB (PDBSum)1DV8   
PDB (IMB)1DV8   
PDB (RSDB)1DV8   
Structural Biology KnowledgeBase1DV8   
SCOP (Structural Classification of Proteins)1DV8   
CATH (Classification of proteins structures)1DV8   
SuperfamilyP07306
Human Protein AtlasENSG00000141505
Peptide AtlasP07306
HPRD00151
IPIIPI00215926   IPI00970987   
Protein Interaction databases
DIP (DOE-UCLA)P07306
IntAct (EBI)P07306
FunCoupENSG00000141505
BioGRIDASGR1
STRING (EMBL)ASGR1
ZODIACASGR1
Ontologies - Pathways
QuickGOP07306
Ontology : AmiGOasialoglycoprotein receptor activity  protein binding  extracellular region  plasma membrane  integral component of plasma membrane  receptor-mediated endocytosis  protein N-linked glycosylation via asparagine  carbohydrate binding  cellular response to extracellular stimulus  protein homodimerization activity  metal ion binding  
Ontology : EGO-EBIasialoglycoprotein receptor activity  protein binding  extracellular region  plasma membrane  integral component of plasma membrane  receptor-mediated endocytosis  protein N-linked glycosylation via asparagine  carbohydrate binding  cellular response to extracellular stimulus  protein homodimerization activity  metal ion binding  
Pathways : KEGGThyroid hormone synthesis   
NDEx NetworkASGR1
Atlas of Cancer Signalling NetworkASGR1
Wikipedia pathwaysASGR1
Orthology - Evolution
OrthoDB432
GeneTree (enSembl)ENSG00000141505
Phylogenetic Trees/Animal Genes : TreeFamASGR1
HOVERGENP07306
HOGENOMP07306
Homologs : HomoloGeneASGR1
Homology/Alignments : Family Browser (UCSC)ASGR1
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASGR1 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASGR1
dbVarASGR1
ClinVarASGR1
1000_GenomesASGR1 
Exome Variant ServerASGR1
ExAC (Exome Aggregation Consortium)ASGR1 (select the gene name)
Genetic variants : HAPMAP432
Genomic Variants (DGV)ASGR1 [DGVbeta]
DECIPHERASGR1 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASGR1 
Mutations
ICGC Data PortalASGR1 
TCGA Data PortalASGR1 
Broad Tumor PortalASGR1
OASIS PortalASGR1 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASGR1  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASGR1
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASGR1
DgiDB (Drug Gene Interaction Database)ASGR1
DoCM (Curated mutations)ASGR1 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASGR1 (select a term)
intoGenASGR1
Cancer3DASGR1(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM108360   
Orphanet
MedgenASGR1
Genetic Testing Registry ASGR1
NextProtP07306 [Medical]
TSGene432
GENETestsASGR1
Huge Navigator ASGR1 [HugePedia]
snp3D : Map Gene to Disease432
BioCentury BCIQASGR1
ClinGenASGR1
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD432
Chemical/Pharm GKB GenePA25042
Clinical trialASGR1
Miscellaneous
canSAR (ICR)ASGR1 (select the gene name)
Probes
Litterature
PubMed56 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASGR1
EVEXASGR1
GoPubMedASGR1
iHOPASGR1
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:53 CEST 2017

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