Atlas of Genetics and Cytogenetics in Oncology and Haematology


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ASGR2 (asialoglycoprotein receptor 2)

Identity

Alias_symbol (synonym)CLEC4H2
Other aliasASGP-R2
ASGPR2
HBXBP
HL-2
HGNC (Hugo) ASGR2
LocusID (NCBI) 433
Atlas_Id 60570
Location 17p13.1  [Link to chromosome band 17p13]
Location_base_pair Starts at 7101322 and ends at 7114811 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASGR2 (17p13.1) / ASGR2 (17p13.1)ASGR2 (17p13.1) / BLOC1S1 (12q13.2)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASGR2   743
Cards
Entrez_Gene (NCBI)ASGR2  433  asialoglycoprotein receptor 2
AliasesASGP-R2; ASGPR2; CLEC4H2; HBXBP; 
HL-2
GeneCards (Weizmann)ASGR2
Ensembl hg19 (Hinxton)ENSG00000161944 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000161944 [Gene_View]  chr17:7101322-7114811 [Contig_View]  ASGR2 [Vega]
ICGC DataPortalENSG00000161944
TCGA cBioPortalASGR2
AceView (NCBI)ASGR2
Genatlas (Paris)ASGR2
WikiGenes433
SOURCE (Princeton)ASGR2
Genetics Home Reference (NIH)ASGR2
Genomic and cartography
GoldenPath hg38 (UCSC)ASGR2  -     chr17:7101322-7114811 -  17p13.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASGR2  -     17p13.1   [Description]    (hg19-Feb_2009)
EnsemblASGR2 - 17p13.1 [CytoView hg19]  ASGR2 - 17p13.1 [CytoView hg38]
Mapping of homologs : NCBIASGR2 [Mapview hg19]  ASGR2 [Mapview hg38]
OMIM108361   
Gene and transcription
Genbank (Entrez)AF529374 AK303787 AK310123 BC017251 BM561839
RefSeq transcript (Entrez)NM_001181 NM_001201352 NM_080912 NM_080913 NM_080914
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASGR2
Cluster EST : UnigeneHs.654440 [ NCBI ]
CGAP (NCI)Hs.654440
Alternative Splicing GalleryENSG00000161944
Gene ExpressionASGR2 [ NCBI-GEO ]   ASGR2 [ EBI - ARRAY_EXPRESS ]   ASGR2 [ SEEK ]   ASGR2 [ MEM ]
Gene Expression Viewer (FireBrowse)ASGR2 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)433
GTEX Portal (Tissue expression)ASGR2
Protein : pattern, domain, 3D structure
UniProt/SwissProtP07307   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP07307  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP07307
Splice isoforms : SwissVarP07307
PhosPhoSitePlusP07307
Domaine pattern : Prosite (Expaxy)C_TYPE_LECTIN_1 (PS00615)    C_TYPE_LECTIN_2 (PS50041)   
Domains : Interpro (EBI)C-type_lectin-like    C-type_lectin-like/link    C-type_lectin_CS    CD209-like_CTLD    CTDL_fold    Lectin_N   
Domain families : Pfam (Sanger)Lectin_C (PF00059)    Lectin_N (PF03954)   
Domain families : Pfam (NCBI)pfam00059    pfam03954   
Domain families : Smart (EMBL)CLECT (SM00034)  
Conserved Domain (NCBI)ASGR2
DMDM Disease mutations433
Blocks (Seattle)ASGR2
SuperfamilyP07307
Human Protein AtlasENSG00000161944
Peptide AtlasP07307
HPRD00152
IPIIPI00011155   IPI00220266   IPI00150200   IPI00909620   IPI00796731   
Protein Interaction databases
DIP (DOE-UCLA)P07307
IntAct (EBI)P07307
FunCoupENSG00000161944
BioGRIDASGR2
STRING (EMBL)ASGR2
ZODIACASGR2
Ontologies - Pathways
QuickGOP07307
Ontology : AmiGOasialoglycoprotein receptor activity  protein binding  plasma membrane  receptor-mediated endocytosis  cell surface receptor signaling pathway  integral component of membrane  protein N-linked glycosylation via asparagine  carbohydrate binding  bone mineralization  regulation of protein stability  lipid homeostasis  
Ontology : EGO-EBIasialoglycoprotein receptor activity  protein binding  plasma membrane  receptor-mediated endocytosis  cell surface receptor signaling pathway  integral component of membrane  protein N-linked glycosylation via asparagine  carbohydrate binding  bone mineralization  regulation of protein stability  lipid homeostasis  
Pathways : KEGGThyroid hormone synthesis   
NDEx NetworkASGR2
Atlas of Cancer Signalling NetworkASGR2
Wikipedia pathwaysASGR2
Orthology - Evolution
OrthoDB433
GeneTree (enSembl)ENSG00000161944
Phylogenetic Trees/Animal Genes : TreeFamASGR2
HOVERGENP07307
HOGENOMP07307
Homologs : HomoloGeneASGR2
Homology/Alignments : Family Browser (UCSC)ASGR2
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASGR2 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASGR2
dbVarASGR2
ClinVarASGR2
1000_GenomesASGR2 
Exome Variant ServerASGR2
ExAC (Exome Aggregation Consortium)ASGR2 (select the gene name)
Genetic variants : HAPMAP433
Genomic Variants (DGV)ASGR2 [DGVbeta]
DECIPHERASGR2 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASGR2 
Mutations
ICGC Data PortalASGR2 
TCGA Data PortalASGR2 
Broad Tumor PortalASGR2
OASIS PortalASGR2 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASGR2  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASGR2
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASGR2
DgiDB (Drug Gene Interaction Database)ASGR2
DoCM (Curated mutations)ASGR2 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASGR2 (select a term)
intoGenASGR2
Cancer3DASGR2(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM108361   
Orphanet
MedgenASGR2
Genetic Testing Registry ASGR2
NextProtP07307 [Medical]
TSGene433
GENETestsASGR2
Target ValidationASGR2
Huge Navigator ASGR2 [HugePedia]
snp3D : Map Gene to Disease433
BioCentury BCIQASGR2
ClinGenASGR2
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD433
Chemical/Pharm GKB GenePA25043
Clinical trialASGR2
Miscellaneous
canSAR (ICR)ASGR2 (select the gene name)
Probes
Litterature
PubMed41 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASGR2
EVEXASGR2
GoPubMedASGR2
iHOPASGR2
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:01 CEST 2017

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