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ASIC3 (acid sensing ion channel subunit 3)

Identity

Alias_namesACCN3
amiloride-sensitive cation channel 3, testis
acid-sensing (proton-gated) ion channel 3
Alias_symbol (synonym)TNaC1
DRASIC
Other aliasSLNAC1
HGNC (Hugo) ASIC3
LocusID (NCBI) 9311
Atlas_Id 60572
Location 7q36.1  [Link to chromosome band 7q36]
Location_base_pair Starts at 151048292 and ends at 151052756 bp from pter ( according to hg38-Dec_2013)
Fusion genes
(updated 2016)
ASIC3 (7q36.1) / ASIC3 (7q36.1)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASIC3   101
Cards
Entrez_Gene (NCBI)ASIC3  9311  acid sensing ion channel subunit 3
AliasesACCN3; DRASIC; SLNAC1; TNaC1
GeneCards (Weizmann)ASIC3
Ensembl hg19 (Hinxton)ENSG00000213199 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000213199 [Gene_View]  chr7:151048292-151052756 [Contig_View]  ASIC3 [Vega]
ICGC DataPortalENSG00000213199
TCGA cBioPortalASIC3
AceView (NCBI)ASIC3
Genatlas (Paris)ASIC3
WikiGenes9311
SOURCE (Princeton)ASIC3
Genetics Home Reference (NIH)ASIC3
Genomic and cartography
GoldenPath hg38 (UCSC)ASIC3  -     chr7:151048292-151052756 +  7q36.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASIC3  -     7q36.1   [Description]    (hg19-Feb_2009)
EnsemblASIC3 - 7q36.1 [CytoView hg19]  ASIC3 - 7q36.1 [CytoView hg38]
Mapping of homologs : NCBIASIC3 [Mapview hg19]  ASIC3 [Mapview hg38]
OMIM611741   
Gene and transcription
Genbank (Entrez)AB010575 AB209421 AF057711 AF095897 AF195024
RefSeq transcript (Entrez)NM_004769 NM_020321 NM_020322
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASIC3
Cluster EST : UnigeneHs.647113 [ NCBI ]
CGAP (NCI)Hs.647113
Alternative Splicing GalleryENSG00000213199
Gene ExpressionASIC3 [ NCBI-GEO ]   ASIC3 [ EBI - ARRAY_EXPRESS ]   ASIC3 [ SEEK ]   ASIC3 [ MEM ]
Gene Expression Viewer (FireBrowse)ASIC3 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)9311
GTEX Portal (Tissue expression)ASIC3
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9UHC3   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9UHC3  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9UHC3
Splice isoforms : SwissVarQ9UHC3
PhosPhoSitePlusQ9UHC3
Domaine pattern : Prosite (Expaxy)ASC (PS01206)   
Domains : Interpro (EBI)ENaC    Na+channel_ASC    Na+channel_ASC_CS   
Domain families : Pfam (Sanger)ASC (PF00858)   
Domain families : Pfam (NCBI)pfam00858   
Conserved Domain (NCBI)ASIC3
DMDM Disease mutations9311
Blocks (Seattle)ASIC3
SuperfamilyQ9UHC3
Human Protein AtlasENSG00000213199
Peptide AtlasQ9UHC3
HPRD10626
IPIIPI00295344   IPI00025345   IPI00220064   IPI00556174   IPI00945091   IPI00946060   
Protein Interaction databases
DIP (DOE-UCLA)Q9UHC3
IntAct (EBI)Q9UHC3
FunCoupENSG00000213199
BioGRIDASIC3
STRING (EMBL)ASIC3
ZODIACASIC3
Ontologies - Pathways
QuickGOQ9UHC3
Ontology : AmiGOcation channel activity  sodium channel activity  cytoplasm  plasma membrane  integral component of plasma membrane  transport  signal transduction  sensory perception  response to heat  response to acidic pH  PDZ domain binding  ion transmembrane transport  sodium ion transmembrane transport  enterobactin transport  enterobactin transporter activity  acid-sensing ion channel activity  sensory perception of sour taste  detection of temperature stimulus involved in sensory perception of pain  detection of mechanical stimulus involved in sensory perception of pain  detection of chemical stimulus involved in sensory perception of pain  
Ontology : EGO-EBIcation channel activity  sodium channel activity  cytoplasm  plasma membrane  integral component of plasma membrane  transport  signal transduction  sensory perception  response to heat  response to acidic pH  PDZ domain binding  ion transmembrane transport  sodium ion transmembrane transport  enterobactin transport  enterobactin transporter activity  acid-sensing ion channel activity  sensory perception of sour taste  detection of temperature stimulus involved in sensory perception of pain  detection of mechanical stimulus involved in sensory perception of pain  detection of chemical stimulus involved in sensory perception of pain  
NDEx NetworkASIC3
Atlas of Cancer Signalling NetworkASIC3
Wikipedia pathwaysASIC3
Orthology - Evolution
OrthoDB9311
GeneTree (enSembl)ENSG00000213199
Phylogenetic Trees/Animal Genes : TreeFamASIC3
HOVERGENQ9UHC3
HOGENOMQ9UHC3
Homologs : HomoloGeneASIC3
Homology/Alignments : Family Browser (UCSC)ASIC3
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASIC3 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASIC3
dbVarASIC3
ClinVarASIC3
1000_GenomesASIC3 
Exome Variant ServerASIC3
ExAC (Exome Aggregation Consortium)ASIC3 (select the gene name)
Genetic variants : HAPMAP9311
Genomic Variants (DGV)ASIC3 [DGVbeta]
DECIPHERASIC3 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASIC3 
Mutations
ICGC Data PortalASIC3 
TCGA Data PortalASIC3 
Broad Tumor PortalASIC3
OASIS PortalASIC3 [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASIC3  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASIC3
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD - Leiden Open Variation Database
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASIC3
DgiDB (Drug Gene Interaction Database)ASIC3
DoCM (Curated mutations)ASIC3 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASIC3 (select a term)
intoGenASIC3
Cancer3DASIC3(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM611741   
Orphanet
MedgenASIC3
Genetic Testing Registry ASIC3
NextProtQ9UHC3 [Medical]
TSGene9311
GENETestsASIC3
Target ValidationASIC3
Huge Navigator ASIC3 [HugePedia]
snp3D : Map Gene to Disease9311
BioCentury BCIQASIC3
ClinGenASIC3
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD9311
Chemical/Pharm GKB GenePA24435
Clinical trialASIC3
Miscellaneous
canSAR (ICR)ASIC3 (select the gene name)
Probes
Litterature
PubMed34 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASIC3
EVEXASIC3
GoPubMedASIC3
iHOPASIC3
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Wed Jun 7 15:39:01 CEST 2017

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