Atlas of Genetics and Cytogenetics in Oncology and Haematology


Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASIC5 (acid sensing ion channel subunit family member 5)

Identity

Alias_namesACCN5
amiloride-sensitive cation channel 5, intestinal
acid-sensing (proton-gated) ion channel family member 5
Alias_symbol (synonym)INAC
HINAC
Other alias
HGNC (Hugo) ASIC5
LocusID (NCBI) 51802
Atlas_Id 60574
Location 4q32.1  [Link to chromosome band 4q32]
Location_base_pair Starts at 155829729 and ends at 155866273 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASIC5   17537
Cards
Entrez_Gene (NCBI)ASIC5  51802  acid sensing ion channel subunit family member 5
AliasesACCN5; HINAC; INAC
GeneCards (Weizmann)ASIC5
Ensembl hg19 (Hinxton)ENSG00000256394 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000256394 [Gene_View]  chr4:155829729-155866273 [Contig_View]  ASIC5 [Vega]
ICGC DataPortalENSG00000256394
TCGA cBioPortalASIC5
AceView (NCBI)ASIC5
Genatlas (Paris)ASIC5
WikiGenes51802
SOURCE (Princeton)ASIC5
Genetics Home Reference (NIH)ASIC5
Genomic and cartography
GoldenPath hg38 (UCSC)ASIC5  -     chr4:155829729-155866273 -  4q32.1   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASIC5  -     4q32.1   [Description]    (hg19-Feb_2009)
EnsemblASIC5 - 4q32.1 [CytoView hg19]  ASIC5 - 4q32.1 [CytoView hg38]
Mapping of homologs : NCBIASIC5 [Mapview hg19]  ASIC5 [Mapview hg38]
OMIM616693   
Gene and transcription
Genbank (Entrez)AJ252011 BC140356 BC146497
RefSeq transcript (Entrez)NM_017419
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASIC5
Cluster EST : UnigeneHs.381349 [ NCBI ]
CGAP (NCI)Hs.381349
Alternative Splicing GalleryENSG00000256394
Gene ExpressionASIC5 [ NCBI-GEO ]   ASIC5 [ EBI - ARRAY_EXPRESS ]   ASIC5 [ SEEK ]   ASIC5 [ MEM ]
Gene Expression Viewer (FireBrowse)ASIC5 [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)51802
GTEX Portal (Tissue expression)ASIC5
Protein : pattern, domain, 3D structure
UniProt/SwissProtQ9NY37   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtQ9NY37  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProQ9NY37
Splice isoforms : SwissVarQ9NY37
PhosPhoSitePlusQ9NY37
Domains : Interpro (EBI)Na+channel_ASC   
Domain families : Pfam (Sanger)ASC (PF00858)   
Domain families : Pfam (NCBI)pfam00858   
Conserved Domain (NCBI)ASIC5
DMDM Disease mutations51802
Blocks (Seattle)ASIC5
SuperfamilyQ9NY37
Human Protein AtlasENSG00000256394
Peptide AtlasQ9NY37
HPRD16470
IPIIPI00026554   
Protein Interaction databases
DIP (DOE-UCLA)Q9NY37
IntAct (EBI)Q9NY37
FunCoupENSG00000256394
BioGRIDASIC5
STRING (EMBL)ASIC5
ZODIACASIC5
Ontologies - Pathways
QuickGOQ9NY37
Ontology : AmiGOplasma membrane  hydrogen ion channel activity  proton transport  integral component of membrane  ion transmembrane transport  sodium ion transmembrane transport  acid-sensing ion channel activity  
Ontology : EGO-EBIplasma membrane  hydrogen ion channel activity  proton transport  integral component of membrane  ion transmembrane transport  sodium ion transmembrane transport  acid-sensing ion channel activity  
NDEx NetworkASIC5
Atlas of Cancer Signalling NetworkASIC5
Wikipedia pathwaysASIC5
Orthology - Evolution
OrthoDB51802
GeneTree (enSembl)ENSG00000256394
Phylogenetic Trees/Animal Genes : TreeFamASIC5
HOVERGENQ9NY37
HOGENOMQ9NY37
Homologs : HomoloGeneASIC5
Homology/Alignments : Family Browser (UCSC)ASIC5
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASIC5 [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASIC5
dbVarASIC5
ClinVarASIC5
1000_GenomesASIC5 
Exome Variant ServerASIC5
ExAC (Exome Aggregation Consortium)ASIC5 (select the gene name)
Genetic variants : HAPMAP51802
Genomic Variants (DGV)ASIC5 [DGVbeta]
DECIPHERASIC5 [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASIC5 
Mutations
ICGC Data PortalASIC5 
TCGA Data PortalASIC5 
Broad Tumor PortalASIC5
OASIS PortalASIC5 [ Somatic mutations - Copy number]
Mutations and Diseases : HGMDASIC5
BioMutasearch ASIC5
DgiDB (Drug Gene Interaction Database)ASIC5
DoCM (Curated mutations)ASIC5 (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASIC5 (select a term)
intoGenASIC5
Cancer3DASIC5(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM616693   
Orphanet
MedgenASIC5
Genetic Testing Registry ASIC5
NextProtQ9NY37 [Medical]
TSGene51802
GENETestsASIC5
Target ValidationASIC5
Huge Navigator ASIC5 [HugePedia]
snp3D : Map Gene to Disease51802
BioCentury BCIQASIC5
ClinGenASIC5
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD51802
Chemical/Pharm GKB GenePA134946702
Clinical trialASIC5
Miscellaneous
canSAR (ICR)ASIC5 (select the gene name)
Probes
Litterature
PubMed2 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASIC5
EVEXASIC5
GoPubMedASIC5
iHOPASIC5
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed Jun 7 15:39:02 CEST 2017

Home   Genes   Leukemias   Solid Tumors   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.