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ASIP (agouti signaling protein)

Identity

Alias_namesAGTIL
agouti (mouse)-signaling protein
agouti signaling protein, nonagouti homolog (mouse)
Alias_symbol (synonym)ASP
Other aliasAGSW
AGTI
SHEP9
HGNC (Hugo) ASIP
LocusID (NCBI) 434
Atlas_Id 714
Location 20q11.22  [Link to chromosome band 20q11]
Location_base_pair Starts at 32848171 and ends at 32857148 bp from pter ( according to hg19-Feb_2009)
Fusion genes
(updated 2016)
ITCH (20q11.22) / ASIP (20q11.22)ITCH 20q11.22 / ASIP 20q11.22

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASIP   745
Cards
Entrez_Gene (NCBI)ASIP  434  agouti signaling protein
AliasesAGSW; AGTI; AGTIL; ASP; 
SHEP9
GeneCards (Weizmann)ASIP
Ensembl hg19 (Hinxton)ENSG00000101440 [Gene_View]  chr20:32848171-32857148 [Contig_View]  ASIP [Vega]
Ensembl hg38 (Hinxton)ENSG00000101440 [Gene_View]  chr20:32848171-32857148 [Contig_View]  ASIP [Vega]
ICGC DataPortalENSG00000101440
TCGA cBioPortalASIP
AceView (NCBI)ASIP
Genatlas (Paris)ASIP
WikiGenes434
SOURCE (Princeton)ASIP
Genetics Home Reference (NIH)ASIP
Genomic and cartography
GoldenPath hg19 (UCSC)ASIP  -     chr20:32848171-32857148 +  20q11.22   [Description]    (hg19-Feb_2009)
GoldenPath hg38 (UCSC)ASIP  -     20q11.22   [Description]    (hg38-Dec_2013)
EnsemblASIP - 20q11.22 [CytoView hg19]  ASIP - 20q11.22 [CytoView hg38]
Mapping of homologs : NCBIASIP [Mapview hg19]  ASIP [Mapview hg38]
OMIM600201   611742   
Gene and transcription
Genbank (Entrez)AY805393 BC104238 BC104239
RefSeq transcript (Entrez)NM_001672
RefSeq genomic (Entrez)NC_000020 NC_018931 NG_011439 NT_011362 NW_004929418
Consensus coding sequences : CCDS (NCBI)ASIP
Cluster EST : UnigeneHs.659995 [ NCBI ]
CGAP (NCI)Hs.659995
Alternative Splicing GalleryENSG00000101440
Gene ExpressionASIP [ NCBI-GEO ]   ASIP [ EBI - ARRAY_EXPRESS ]   ASIP [ SEEK ]   ASIP [ MEM ]
Gene Expression Viewer (FireBrowse)ASIP [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)434
GTEX Portal (Tissue expression)ASIP
Protein : pattern, domain, 3D structure
UniProt/SwissProtP42127   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP42127  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP42127
Splice isoforms : SwissVarP42127
PhosPhoSitePlusP42127
Domaine pattern : Prosite (Expaxy)AGOUTI_1 (PS60024)    AGOUTI_2 (PS51150)   
Domains : Interpro (EBI)Agouti    Agouti_dom   
Domain families : Pfam (Sanger)Agouti (PF05039)   
Domain families : Pfam (NCBI)pfam05039   
Domain families : Smart (EMBL)Agouti (SM00792)  
Conserved Domain (NCBI)ASIP
DMDM Disease mutations434
Blocks (Seattle)ASIP
PDB (SRS)1Y7J    1Y7K    2IQW    2KZA    2L1J   
PDB (PDBSum)1Y7J    1Y7K    2IQW    2KZA    2L1J   
PDB (IMB)1Y7J    1Y7K    2IQW    2KZA    2L1J   
PDB (RSDB)1Y7J    1Y7K    2IQW    2KZA    2L1J   
Structural Biology KnowledgeBase1Y7J    1Y7K    2IQW    2KZA    2L1J   
SCOP (Structural Classification of Proteins)1Y7J    1Y7K    2IQW    2KZA    2L1J   
CATH (Classification of proteins structures)1Y7J    1Y7K    2IQW    2KZA    2L1J   
SuperfamilyP42127
Human Protein AtlasENSG00000101440
Peptide AtlasP42127
HPRD02562
IPIIPI00030037   
Protein Interaction databases
DIP (DOE-UCLA)P42127
IntAct (EBI)P42127
FunCoupENSG00000101440
BioGRIDASIP
STRING (EMBL)ASIP
ZODIACASIP
Ontologies - Pathways
QuickGOP42127
Ontology : AmiGOreceptor binding  extracellular space  cell  generation of precursor metabolites and energy  signal transduction  cell-cell signaling  adult feeding behavior  hormone-mediated signaling pathway  type 3 melanocortin receptor binding  type 4 melanocortin receptor binding  melanosome transport  melanosome organization  regulation of molecular function, epigenetic  melanin biosynthetic process  positive regulation of melanin biosynthetic process  genetic imprinting  
Ontology : EGO-EBIreceptor binding  extracellular space  cell  generation of precursor metabolites and energy  signal transduction  cell-cell signaling  adult feeding behavior  hormone-mediated signaling pathway  type 3 melanocortin receptor binding  type 4 melanocortin receptor binding  melanosome transport  melanosome organization  regulation of molecular function, epigenetic  melanin biosynthetic process  positive regulation of melanin biosynthetic process  genetic imprinting  
Pathways : KEGGMelanogenesis   
NDEx NetworkASIP
Atlas of Cancer Signalling NetworkASIP
Wikipedia pathwaysASIP
Orthology - Evolution
OrthoDB434
GeneTree (enSembl)ENSG00000101440
Phylogenetic Trees/Animal Genes : TreeFamASIP
HOVERGENP42127
HOGENOMP42127
Homologs : HomoloGeneASIP
Homology/Alignments : Family Browser (UCSC)ASIP
Gene fusions - Rearrangements
Fusion : MitelmanITCH/ASIP [20q11.22/20q11.22]  [t(20;20)(q11;q11)]  
Fusion: TCGAITCH 20q11.22 ASIP 20q11.22 BRCA HNSC LUAD LUSC OV
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASIP [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASIP
dbVarASIP
ClinVarASIP
1000_GenomesASIP 
Exome Variant ServerASIP
ExAC (Exome Aggregation Consortium)ASIP (select the gene name)
Genetic variants : HAPMAP434
Genomic Variants (DGV)ASIP [DGVbeta]
DECIPHER (Syndromes)20:32848171-32857148  ENSG00000101440
CONAN: Copy Number AnalysisASIP 
Mutations
ICGC Data PortalASIP 
TCGA Data PortalASIP 
Broad Tumor PortalASIP
OASIS PortalASIP [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASIP  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASIP
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
BioMutasearch ASIP
DgiDB (Drug Gene Interaction Database)ASIP
DoCM (Curated mutations)ASIP (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASIP (select a term)
intoGenASIP
Cancer3DASIP(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM600201    611742   
Orphanet
MedgenASIP
Genetic Testing Registry ASIP
NextProtP42127 [Medical]
TSGene434
GENETestsASIP
Huge Navigator ASIP [HugePedia]
snp3D : Map Gene to Disease434
BioCentury BCIQASIP
ClinGenASIP
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD434
Chemical/Pharm GKB GenePA25045
Clinical trialASIP
Miscellaneous
canSAR (ICR)ASIP (select the gene name)
Probes
Litterature
PubMed40 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASIP
EVEXASIP
GoPubMedASIP
iHOPASIP
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Thu Mar 30 14:53:13 CEST 2017

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