Atlas of Genetics and Cytogenetics in Oncology and Haematology

Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   
X Y 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 NA

ASMT (acetylserotonin O-methyltransferase)

Identity

Other namesASMTY
HIOMT
HIOMTY
HGNC (Hugo) ASMT
LocusID (NCBI) 438
Location Xp22.33
Location_base_pair Starts at 1733941 and ends at 1761974 bp from pter ( according to hg19-Feb_2009)
Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

External links

Nomenclature
HGNC (Hugo)ASMT   750
Entrez_Gene (NCBI)ASMT  438  acetylserotonin O-methyltransferase
Cards
GeneCards (Weizmann)ASMT
Ensembl (Hinxton)ENSG00000196433 [Gene_View]  chrX:1733941-1761974 [Contig_View]  ASMT [Vega]
AceView (NCBI)ASMT
Genatlas (Paris)ASMT
SOURCE (Stanford)NM_001171038 NM_001171039 NM_004043
Genomic and cartography
GoldenPath (UCSC)ASMT  -  Xp22.33   chrX:1733941-1761974 +  Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblASMT - Xp22.33 [CytoView]
Mapping of homologs : NCBIASMT [Mapview]
OMIM300015   402500   
Gene and transcription
Genbank (Entrez)AK314922 BC001620 M83779 U11090 U11091
RefSeq transcript (SRS)NM_001171038 NM_001171039 NM_004043
RefSeq transcript (Entrez)NM_001171038 NM_001171039 NM_004043
RefSeq genomic (SRS)NC_000023 NC_000024 NC_018934 NG_016337 NT_167196 NT_167204 NW_001841157 NW_004078117
RefSeq genomic (Entrez)NC_000023 NC_000024 NC_018934 NG_016337 NT_167196 NT_167204 NW_001841157 NW_004078117
Consensus coding sequences : CCDS (NCBI)ASMT
Cluster EST : UnigeneHs.522572 [ SRS ] Hs.522572 [ NCBI ]
CGAP (NCI)Hs.522572
Alternative Splicing : Fast-db (Paris)GSHG0032977
Alternative Splicing GalleryENSG00000196433
Gene ExpressionASMT [ NCBI-GEO ]   ASMT [ EBI - ARRAY_EXPRESS ]
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46597 (SRS) P46597 (Uniprot)
NextProtP46597
With graphics : InterProP46597
Splice isoforms : SwissVarP46597(Swissvar)
Domains : Interpro (SRS)AS_MeTrfase    O-MeTrfase_CAOMT-type    O_MeTrfase_2    WHTH_trsnscrt_rep_DNA-bd   
Domains : Interpro (EBI)AS_MeTrfase    O-MeTrfase_CAOMT-type    O_MeTrfase_2    WHTH_trsnscrt_rep_DNA-bd   
Related proteins : CluSTrP46597
Domain families : Pfam (SRS)Methyltransf_2 (PF00891)   
Domain families : Pfam (Sanger)Methyltransf_2 (PF00891)   
Domain families : Pfam (NCBI)pfam00891   
DMDM438
Blocks (Seattle)P46597
Human Protein AtlasENSG00000196433
HPRD02058
IPIIPI00007218   IPI00219431   IPI00219432   IPI00552424   
Protein Interaction databases
DIP (DOE-UCLA)P46597
IntAct (EBI)P46597
FunCoupENSG00000196433
REACTOMEASMT
Protein Interaction Database438
BioGRIDASMT
InParanoidP46597
Interologous Interaction database P46597
IntegromeDBASMT
Polymorphism : SNP, mutations, diseases
SNP Single Nucleotide Polymorphism (NCBI)ASMT
SNP (GeneSNP Utah)ASMT
SNP : HGBaseASMT
Genetic variants : HAPMAPASMT
Somatic Mutations in Cancer : COSMICASMT 
CONAN: Copy Number AnalysisASMT 
Mutations and Diseases : HGMDASMT
OMIM300015    402500   
GENETests300015    402500   
Disease Genetic AssociationASMT
Huge Navigator ASMT [HugePedia]  ASMT [HugeCancerGEM]
Genomic VariantsASMT  ASMT [DGVbeta]
snp3D : Map Gene to Disease438
General knowledge
Homologs : HomoloGeneASMT
Homology/Alignments : Family Browser (UCSC)ASMT
Phylogenetic Trees/Animal Genes : TreeFamASMT
Catalytic activity : Enzyme2.1.1.4 [ Enzyme-Expasy ]   2.1.1.4 [ Enzyme-SRS ]   2.1.1.4 [ IntEnz-EBI ]   2.1.1.4 [ BRENDA ]   2.1.1.4 [ KEGG ]   
Chemical/Protein Interactions : CTD438
Chemical/Pharm GKB GenePA25049
Clinical trialASMT
Cancer Resource (Charite)ENSG00000196433
Ontology : AmiGOcytosol  translation  O-methyltransferase activity  acetylserotonin O-methyltransferase activity  melatonin biosynthetic process  cellular nitrogen compound metabolic process  small molecule metabolic process  indolalkylamine biosynthetic process  
Ontology : EGO-EBIcytosol  translation  O-methyltransferase activity  acetylserotonin O-methyltransferase activity  melatonin biosynthetic process  cellular nitrogen compound metabolic process  small molecule metabolic process  indolalkylamine biosynthetic process  
Other databases
Probes
Litterature
PubMed19 Pubmed reference(s) in Entrez
PubGeneASMT
iHOPASMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

Search in all EBI   NCBI

Contributor(s)

Written09-2002Dessen P, Le Minor S
Updated01-2013Dessen P

© Atlas of Genetics and Cytogenetics in Oncology and Haematology
indexed on : Wed May 1 12:41:11 CEST 2013
Home   Genes   Leukemias   Solid Tumours   Cancer-Prone   Deep Insight   Case Reports   Journals  Portal   Teaching   

For comments and suggestions or contributions, please contact us

jlhuret@AtlasGeneticsOncology.org.