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ASMT (acetylserotonin O-methyltransferase)

Identity

Alias_symbol (synonym)HIOMT
ASMTY
HIOMTY
Other alias
HGNC (Hugo) ASMT
LocusID (NCBI) 438
Atlas_Id 51527
Location Xp22.33  [Link to chromosome band Xp22]
Location_base_pair Starts at 1615048 and ends at 1643081 bp from pter ( according to hg38-Dec_2013)

Note

Non-annotated gene. Preliminary data : if you are an author
who wish to write a full paper/card on this gene, go to  How to contribute

DNA/RNA

 


External links

Nomenclature
HGNC (Hugo)ASMT   750
Cards
Entrez_Gene (NCBI)ASMT  438  acetylserotonin O-methyltransferase
AliasesASMTY; HIOMT; HIOMTY
GeneCards (Weizmann)ASMT
Ensembl hg19 (Hinxton)ENSG00000196433 [Gene_View]
Ensembl hg38 (Hinxton)ENSG00000196433 [Gene_View]  chrX:1615048-1643081 [Contig_View]  ASMT [Vega]
ICGC DataPortalENSG00000196433
TCGA cBioPortalASMT
AceView (NCBI)ASMT
Genatlas (Paris)ASMT
WikiGenes438
SOURCE (Princeton)ASMT
Genetics Home Reference (NIH)ASMT
Genomic and cartography
GoldenPath hg38 (UCSC)ASMT  -     chrX:1615048-1643081 +  Xp22.33   [Description]    (hg38-Dec_2013)
GoldenPath hg19 (UCSC)ASMT  -     Xp22.33   [Description]    (hg19-Feb_2009)
EnsemblASMT - Xp22.33 [CytoView hg19]  ASMT - Xp22.33 [CytoView hg38]
Mapping of homologs : NCBIASMT [Mapview hg19]  ASMT [Mapview hg38]
OMIM300015   402500   
Gene and transcription
Genbank (Entrez)AK314922 BC001620 KJ534774 KJ534775 KJ534776
RefSeq transcript (Entrez)NM_001171038 NM_001171039 NM_004043
RefSeq genomic (Entrez)
Consensus coding sequences : CCDS (NCBI)ASMT
Cluster EST : UnigeneHs.522572 [ NCBI ]
CGAP (NCI)Hs.522572
Alternative Splicing GalleryENSG00000196433
Gene ExpressionASMT [ NCBI-GEO ]   ASMT [ EBI - ARRAY_EXPRESS ]   ASMT [ SEEK ]   ASMT [ MEM ]
Gene Expression Viewer (FireBrowse)ASMT [ Firebrowse - Broad ]
SOURCE (Princeton)Expression in : [Datasets]   [Normal Tissue Atlas]  [carcinoma Classsification]  [NCI60]
GenevisibleExpression in : [tissues]  [cell-lines]  [cancer]  [perturbations]  
BioGPS (Tissue expression)438
GTEX Portal (Tissue expression)ASMT
Protein : pattern, domain, 3D structure
UniProt/SwissProtP46597   [function]  [subcellular_location]  [family_and_domains]  [pathology_and_biotech]  [ptm_processing]  [expression]  [interaction]
NextProtP46597  [Sequence]  [Exons]  [Medical]  [Publications]
With graphics : InterProP46597
Splice isoforms : SwissVarP46597
Catalytic activity : Enzyme2.1.1.4 [ Enzyme-Expasy ]   2.1.1.42.1.1.4 [ IntEnz-EBI ]   2.1.1.4 [ BRENDA ]   2.1.1.4 [ KEGG ]   
PhosPhoSitePlusP46597
Domaine pattern : Prosite (Expaxy)SAM_OMT_II (PS51683)   
Domains : Interpro (EBI)ASMT_dimerisation    O-MeTrfase_COMT    O_MeTrfase_2    SAM-dependent_MTases    WHTH_DNA-bd_dom   
Domain families : Pfam (Sanger)Dimerisation2 (PF16864)    Methyltransf_2 (PF00891)   
Domain families : Pfam (NCBI)pfam16864    pfam00891   
Conserved Domain (NCBI)ASMT
DMDM Disease mutations438
Blocks (Seattle)ASMT
PDB (SRS)4A6D    4A6E   
PDB (PDBSum)4A6D    4A6E   
PDB (IMB)4A6D    4A6E   
PDB (RSDB)4A6D    4A6E   
Structural Biology KnowledgeBase4A6D    4A6E   
SCOP (Structural Classification of Proteins)4A6D    4A6E   
CATH (Classification of proteins structures)4A6D    4A6E   
SuperfamilyP46597
Human Protein AtlasENSG00000196433
Peptide AtlasP46597
HPRD02058
IPIIPI00007218   IPI00219431   IPI00219432   IPI00552424   
Protein Interaction databases
DIP (DOE-UCLA)P46597
IntAct (EBI)P46597
FunCoupENSG00000196433
BioGRIDASMT
STRING (EMBL)ASMT
ZODIACASMT
Ontologies - Pathways
QuickGOP46597
Ontology : AmiGOcytosol  translation  O-methyltransferase activity  S-methyltransferase activity  acetylserotonin O-methyltransferase activity  melatonin biosynthetic process  melatonin biosynthetic process  methylation  identical protein binding  protein homodimerization activity  indolalkylamine biosynthetic process  
Ontology : EGO-EBIcytosol  translation  O-methyltransferase activity  S-methyltransferase activity  acetylserotonin O-methyltransferase activity  melatonin biosynthetic process  melatonin biosynthetic process  methylation  identical protein binding  protein homodimerization activity  indolalkylamine biosynthetic process  
Pathways : KEGGTryptophan metabolism   
NDEx NetworkASMT
Atlas of Cancer Signalling NetworkASMT
Wikipedia pathwaysASMT
Orthology - Evolution
OrthoDB438
GeneTree (enSembl)ENSG00000196433
Phylogenetic Trees/Animal Genes : TreeFamASMT
HOVERGENP46597
HOGENOMP46597
Homologs : HomoloGeneASMT
Homology/Alignments : Family Browser (UCSC)ASMT
Gene fusions - Rearrangements
Polymorphisms : SNP and Copy number variants
NCBI Variation ViewerASMT [hg38]
dbSNP Single Nucleotide Polymorphism (NCBI)ASMT
dbVarASMT
ClinVarASMT
1000_GenomesASMT 
Exome Variant ServerASMT
ExAC (Exome Aggregation Consortium)ASMT (select the gene name)
Genetic variants : HAPMAP438
Genomic Variants (DGV)ASMT [DGVbeta]
DECIPHERASMT [patients]   [syndromes]   [variants]   [genes]  
CONAN: Copy Number AnalysisASMT 
Mutations
ICGC Data PortalASMT 
TCGA Data PortalASMT 
Broad Tumor PortalASMT
OASIS PortalASMT [ Somatic mutations - Copy number]
Somatic Mutations in Cancer : COSMICASMT  [overview]  [genome browser]  [tissue]  [distribution]  
Mutations and Diseases : HGMDASMT
LOVD (Leiden Open Variation Database)Whole genome datasets
LOVD (Leiden Open Variation Database)LOVD 3.0 shared installation
LOVD (Leiden Open Variation Database)X-chromosome gene database
BioMutasearch ASMT
DgiDB (Drug Gene Interaction Database)ASMT
DoCM (Curated mutations)ASMT (select the gene name)
CIViC (Clinical Interpretations of Variants in Cancer)ASMT (select a term)
intoGenASMT
Cancer3DASMT(select the gene name)
Impact of mutations[PolyPhen2] [SIFT Human Coding SNP] [Buck Institute : MutDB] [Mutation Assessor] [Mutanalyser]
Diseases
OMIM300015    402500   
Orphanet
MedgenASMT
Genetic Testing Registry ASMT
NextProtP46597 [Medical]
TSGene438
GENETestsASMT
Huge Navigator ASMT [HugePedia]
snp3D : Map Gene to Disease438
BioCentury BCIQASMT
ClinGenASMT
Clinical trials, drugs, therapy
Chemical/Protein Interactions : CTD438
Chemical/Pharm GKB GenePA25049
Clinical trialASMT
Miscellaneous
canSAR (ICR)ASMT (select the gene name)
Probes
Litterature
PubMed30 Pubmed reference(s) in Entrez
GeneRIFsGene References Into Functions (Entrez)
CoreMineASMT
EVEXASMT
GoPubMedASMT
iHOPASMT
Genes in titleautomatic search in PubMed
REVIEW articlesautomatic search in PubMed
Last year publicationsautomatic search in PubMed

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indexed on : Fri May 19 12:06:55 CEST 2017

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